G221682 (colca2)


Basic Information

Item Value
gene id G221682
gene name colca2
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6871737 ~ 6871979 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262484
AGAAATAATCTAATACATACTAAGCTGTTAGTGTAATAGTCCGCGCATGATGAAGGGAAGTATCCGTGCGGCCACTGCGCAGGAGCAGGCGCACACACCGCAGTGCTGGAGCTGAAGTTCTCTGCAGGGATCATGTTCATCAGCAGCTGATCATCAAACATGTCCTCCATGGCCATATGCACGCTTTCTGCAAACTGTCGAGGCTGGAAATAAGCATCCTGCGCCGAGAGAATATCGAGATGA

Function

symbol description
colca2 Located in cytoplasm.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262484 True 243 lncRNA 0.50 1 6871737 6871979

Neighbor

gene id symbol gene type direction distance location
LOC113532877 LOC108277444 coding downstream 30766 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 115471 6748916 ~ 6756266 (-)
LOC113532622 NA coding downstream 266673 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 291776 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 317286 6536048 ~ 6554451 (-)
LOC113532633 pou2af1 coding upstream 11149 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 59543 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 87144 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 291978 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 302373 7174352 ~ 7186264 (-)
G221681 NA non-coding downstream 1463 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 65370 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 109950 6760656 ~ 6761787 (-)
G221638 NA non-coding downstream 112119 6759410 ~ 6759618 (-)
G221618 NA non-coding downstream 183426 6687589 ~ 6688311 (-)
G221683 colca2 non-coding upstream 852 6872831 ~ 6873359 (-)
G221812 NA non-coding upstream 250738 7122717 ~ 7124202 (-)
G221814 NA non-coding upstream 261538 7133517 ~ 7178296 (-)
G221844 NA non-coding upstream 346687 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 499391 7371370 ~ 7372320 (-)
LOC113532805 NA other downstream 218319 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 847384 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1067764 5797928 ~ 5803973 (-)
G220990 NA other downstream 1160846 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1272362 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 520436 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1532850 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2069039 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2805280 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3436071 10308050 ~ 10312516 (-)

Expression


Co-expression Network