G221812


Basic Information

Item Value
gene id G221812
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7122717 ~ 7124202 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262657
tttttgaaatCTAGCAAGTAAACAATATATTAAGCTCTTGTTTTCTTGTCTGCCACAAAAATTCCCTTGGGTTATAGCTTTCTATCAGTGGTGCACTTGTCGAGTAAAAACATTAGGTATGACACTGTACTGGAATATGGACTGTGTCAATTGTCACATGAAAACTGTGCAATTCCTCTTCAATCATATGACACAAGGAAAGATGGAGCAGAATATACTGCATTTTGTCCcacttgtttgtgtgttttacttgCAAGAAGAGCATAAAGCAAAAATACAAACTGTGGATTAAGATGTGAAACCTGAAAAAGCTTATCCTCCACCTCTGGTCTACTTGTTACTCCATATCAGTTGCCCAGTCGCACTGCTGAACAGCTTAGACTTGTGTAAGTAGAGCTGGCGTTATGGCCAAAAATCTTgtcacagtttttattttttaaatatcactcaatactgatatttattaataattactttttattGCAATGCTCAAATGTTAAGTTAGCATAATATCCAACACAACGGCACATGTGCCCTGTTGCATCTGTTtcacaatgtatttatttaagtatattAAGATGCATTGAAACCTCACACTGTCACTTGCCACCTTCCTCAGTGTACCATGCCATATCTGTCTCACTGCTAACACGTAGCCATGCAGTATTTTTAGCCCAGTGTAAATGATTCAGTGCTGCAATCTTTCCTCCAGGCCTACCCATACTGAGATGCTTATCACCACATCTCAGACCGAGGTTTGTCTCAGTGGTTAAGTTTTGAAATGTAAGAAGCCAGTGGGGTCAAATTTGGGTTTGGTTACAATTCAAAGTGGGACCACTCTCTCCCCTCAAAGGAAAAACTTAGGTGGTGGGAAGCAATTTTACTGCTCTTCAACTAACTGTGTAGCAGTATTGTAGGAGACAAATGACTTAATCAGTTACCCATCTCATACAGTTAACTCAAAGCTGTGTTTCAGACACTACATGACAAATCTGGTGTGAATTTTAGATAATACTGCTCCAGTGTGAAAGTGCTGTGAAGGccttttcaatattttttgcaAGTTCACACGTCTTGAGTTCGAGTGTAAAAGGAGATACCTGTGATTTGTATTATTGAATGAAAAATAGCAACTAAAGAGTTGCATGACTGACTTTGTTTCTCTTTGCAGGTTCTGCTCCAGGCCTCTTCTCTTTATCAGTGAAAGAGAACTCCTCGTCTCCCTCCACAAAAGCATAGGGATCTGCATCCAGCTCCtgctctccatcacacacagatACTGAGAGATACTGGTTCTTCTTTTGAATGTACATCTTCACCCGCTCCTCTGACACCTTCAGAGTCGCAGAGGAAGCCATCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262657 True 1360 lncRNA 0.40 2 7122717 7124202

Neighbor

gene id symbol gene type direction distance location
phldb1b phldb1,LOC108277892 coding downstream 82857 6959123 ~ 7039860 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding downstream 186648 6931522 ~ 6936069 (-)
LOC113532633 pou2af1 coding downstream 233726 6883128 ~ 6888991 (-)
LOC113532877 LOC108277444 coding downstream 281746 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 366451 6748916 ~ 6756266 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 39755 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 50150 7174352 ~ 7186264 (-)
thap12b thap12,LOC108278397 coding upstream 63598 7187800 ~ 7195208 (-)
trnap-cgg_8 NA coding upstream 71321 7195523 ~ 7195594 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding upstream 74629 7198831 ~ 7225546 (-)
G221683 colca2 non-coding downstream 249358 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 250738 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 252443 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 316350 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 360930 6760656 ~ 6761787 (-)
G221814 NA non-coding upstream 9315 7133517 ~ 7178296 (-)
G221844 NA non-coding upstream 94464 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 247168 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 452352 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 1008161 8132363 ~ 8132704 (-)
LOC113532805 NA other downstream 469299 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1098364 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1318744 5797928 ~ 5803973 (-)
G220990 NA other downstream 1411826 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1523342 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 268213 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1280627 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1816816 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2553057 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3183848 10308050 ~ 10312516 (-)

Expression


Co-expression Network