G221814


Basic Information

Item Value
gene id G221814
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7133517 ~ 7178296 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU262663
tttttttttgttttttttCAGGTTGACGCACTTTATTCCTAAAATTGGCTGCACCATTCATAGCGGCACAAGATTGTatgtacacattttatatagatatttacacacacaattctctaaatctgatataaaatatataatttgacAATGTATCTCTTGTTCTCTTATTTGAACACATTAAATCGCTGTACAGGTATTCTGCAACTACAGCCTATCCTGCAGTTTCCACCACACAAGGCTAAGAACAGCTTCAGCATACTTCATTTGTACATCATGGCAATAAAAATTGTCTTTCCACTCTCAGAAAATACTTCTCTAAAAGCAACCTACTGCAAATACACTTGTCAGTTCTTGCCTTGCAATTAAGACAATTACATACATGTTagagcatttttaattttataggaAGGCAATGTGTACCTtcagatattatatatataaaagattaagaaattacacatttaaaaacgTACAATAAATAAGATATATGCAGGCATTTCATTTGCAAAAGATCTTACCCAGACCAAAATATCAGGTcattaaaaagaacatttcagTAGACTAGTCCCTTTAGCTCCAGTTGTTTTTGAGATGGACTCTTGGCAATGCTAATGTATCCCTGCACTTCCCAAGTGCCCAGACtgactgtgtgatgtgtgctaTGGTCTGCAGTAGCAGTGCATCACAGCAAGTAATGATTTTACAGCACGTTCATGATGAAGTTGTACATCTGGTTAAGCACGACAAAGTGCACAGGGAGACAAGAGCGGCGGTCCTGCGTGGCAGGGTCACAGGTCAGCCAGGAGAGGGCGTTGTACTGCTCCAGCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU262663 True 828 lncRNA 0.38 2 7133517 7178296

Neighbor

gene id symbol gene type direction distance location
phldb1b phldb1,LOC108277892 coding downstream 93657 6959123 ~ 7039860 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding downstream 197448 6931522 ~ 6936069 (-)
LOC113532633 pou2af1 coding downstream 244526 6883128 ~ 6888991 (-)
LOC113532877 LOC108277444 coding downstream 292546 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 377251 6748916 ~ 6756266 (-)
thap12b thap12,LOC108278397 coding upstream 9504 7187800 ~ 7195208 (-)
trnap-cgg_8 NA coding upstream 17227 7195523 ~ 7195594 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding upstream 20535 7198831 ~ 7225546 (-)
alcamb LOC108278292 coding upstream 51622 7229918 ~ 7253606 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding upstream 98152 7276448 ~ 7283973 (-)
G221812 NA non-coding downstream 9315 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 260158 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 261538 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 263243 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 327150 6806155 ~ 6806367 (-)
G221844 NA non-coding upstream 40370 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 193074 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 398258 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 954067 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 984337 8162633 ~ 8162848 (-)
LOC113532805 NA other downstream 480099 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1109164 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1329544 5797928 ~ 5803973 (-)
G220990 NA other downstream 1422626 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1534142 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 214119 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1226533 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1762722 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2498963 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3129754 10308050 ~ 10312516 (-)

Expression


Co-expression Network