G222377


Basic Information

Item Value
gene id G222377
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8162633 ~ 8162848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU263294
aacacctccctctgcaactagatcctggacttcctgactgggagacctcagtcagtccggatcgggaacagcatctccaacaccaccacactgagcactggggccccacagggctgtgtgctcagtccattgctgttcactctgctgactcacgactgtgtagcaacgCACAGCttgaatcacatcatcaagttcgccgatgacacgaccgtggtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263294 True 216 lncRNA 0.56 1 8162633 8162848

Neighbor

gene id symbol gene type direction distance location
LOC113532837 LOC108277602 coding downstream 25424 8122414 ~ 8137209 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 254775 7745299 ~ 7907858 (-)
jam3a jam3 coding downstream 570815 7578055 ~ 7591818 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 586356 7571201 ~ 7576277 (-)
acad8 acad8,LOC107582571 coding downstream 599039 7549827 ~ 7563594 (-)
dixdc1a dixdc1 coding upstream 40814 8203662 ~ 8212072 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 328940 8491788 ~ 8498469 (-)
il4i1 il4i1 coding upstream 339846 8502694 ~ 8512202 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 400322 8563170 ~ 8613424 (-)
laynb LOC108277700 coding upstream 452589 8615437 ~ 8630154 (-)
G222367 NA non-coding downstream 29929 8132363 ~ 8132704 (-)
LOC113532601 NA non-coding downstream 585577 7576554 ~ 7577056 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 790313 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 941704 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 984337 7133517 ~ 7178296 (-)
G222391 NA non-coding upstream 33957 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 78216 8241064 ~ 8242176 (-)
G222591 NA non-coding upstream 301728 8464576 ~ 8491284 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding upstream 382064 8544912 ~ 8548374 (-)
G222852 NA non-coding upstream 874632 9037480 ~ 9043751 (-)
zgc:77784 LOC108277423 other downstream 699134 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1509215 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2138280 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2358660 5797928 ~ 5803973 (-)
G220990 NA other downstream 2451742 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 241981 8404829 ~ 8478912 (-)
G222809 oaf other upstream 778170 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1514411 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2145202 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2545404 10708252 ~ 10721333 (-)

Expression


Co-expression Network