G222522


Basic Information

Item Value
gene id G222522
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8241064 ~ 8242176 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU263469
AAAAGTTGGACTATTTGTATCACATGGTATATCCAGTAACTTTCAGATTATATGGGTGAGCCCATGACTGAAGTGACATTTGCAGTGACCCAGTTCATTAGAACTCATAATAacacataattattaaaatactttaaaagtCTTATTTTcgcatttaaaaaagtttttttttttttttaaccaatttgAAGTGAGAGGAACTACACTGAAAGTAAGTAACGTATATCATTGGACAAGATTCAAAACCCTGGACAATTTAATCACATGATATATCCTAAAAACACCATAAAAATCAATGTAGTGTATGctatattctttaaaaaaaaaaggtgtaggAGCCGACAGAACAGCAACTTTCCGTGTGTATGGATGATTCCATGACcggggtgccatttgtgtctCCCTGATAGTACATGTACAAATATCATCACCTAGAGAGCAGCATTTGTTACCTATCTCAGTCCactataattattaaaatgcttCAAAAGTCTTGTTTAGGTGACTTTTAGGCAAGAGGAACCATATTGTTTAAGTAAGTGATGTCAGGTAATTCCATGTGCACATCAAAATGACCAATATGCTTGCATTGGCTACCTGTTTTATCCCAACCACAGAaactgaagtgatttatttcttgcTCACTCAACCTCTTTTCACATGAGTAACCATGCATCTAGCAAGCATTTTTCTAGCATCTTGTATTCATGCATTCATCCTTAtgaaatattccacaagtcacatgttcaacaggaagttgcatcatccaaatttcaTGAAGATCTTGGGAAGATGAAAAATAGGTTTTCTCATTCGTTTTTCATTATTGTCAATGACATTGTAATACTGACTGATGAGACACTTAGTACAGCCCTTTTAGCCAGATTATAGACTGTTAACTACATTTTGTGGGTTTGCTAAATATTATCAAAATATCTTCTGATTATTATCTAGCAAAATACAGAGTACAGTGAAGCCTTTAAACTAGCAGGATAAACACAGGGTCAAAAGTATACTCGGCAAATAACTGCCTTCACTGAATTTACAAATTCTGACTTGAAAGCACTTTTCAATAAAAGAGTGTGAAACtgcatcacattattattattatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263469 True 1113 lncRNA 0.34 1 8241064 8242176

Neighbor

gene id symbol gene type direction distance location
dixdc1a dixdc1 coding downstream 28992 8203662 ~ 8212072 (-)
LOC113532837 LOC108277602 coding downstream 103855 8122414 ~ 8137209 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 333206 7745299 ~ 7907858 (-)
jam3a jam3 coding downstream 649246 7578055 ~ 7591818 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 664787 7571201 ~ 7576277 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding upstream 249612 8491788 ~ 8498469 (-)
il4i1 il4i1 coding upstream 260518 8502694 ~ 8512202 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 320994 8563170 ~ 8613424 (-)
laynb LOC108277700 coding upstream 373261 8615437 ~ 8630154 (-)
zgc:162608 LOC108277432 coding upstream 403467 8645643 ~ 8647238 (-)
G222391 NA non-coding downstream 43857 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 78216 8162633 ~ 8162848 (-)
G222367 NA non-coding downstream 108360 8132363 ~ 8132704 (-)
LOC113532601 NA non-coding downstream 664008 7576554 ~ 7577056 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 868744 7371370 ~ 7372320 (-)
G222591 NA non-coding upstream 222400 8464576 ~ 8491284 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding upstream 302736 8544912 ~ 8548374 (-)
G222852 NA non-coding upstream 795304 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1515982 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1560316 9802492 ~ 9806509 (-)
zgc:77784 LOC108277423 other downstream 777565 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1587646 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2216711 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2437091 5797928 ~ 5803973 (-)
G220990 NA other downstream 2530173 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 162653 8404829 ~ 8478912 (-)
G222809 oaf other upstream 698842 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1435083 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2065874 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2466076 10708252 ~ 10721333 (-)

Expression


Co-expression Network