G222610 (ppp2r1b,LOC108277698,LOC104918016,LOC106612458)


Basic Information

Item Value
gene id G222610
gene name ppp2r1b,LOC108277698,LOC104918016,LOC106612458
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8544912 ~ 8548374 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU263563
AAAGGCATGATTTCATCACGCATAAATGCAATGAGTAAACATGGGGGGTGCTCACTGGCGGATCTCGGCCTTGACAGAGCTGGAGACACGTGGGTAGCAGACGCTGAACAGGCCACAGGCAGAGGTGCGTGATGTGAACCAGTCGCCGCTGGCCAGTCGTTTCACCAGGGGCTCGAAGTGCACCTCTAGGTCTACAGGTGAGTGCTCCTGAGAGATCTTGCGCAGTGACTCCACAGCTTTGTCTCGAACCACCGTCTCCTCCACAGTGGCCAGGCTCTCCAGCGGTGGCAGGCAGTGCACATACTCCGGCCCTCCGACCAGCATGGTGAAGTTCCCCAGCTGCTCAGCCAGGGCAAGAAGCACCTCATCCTCATCGTAAATAGTGTCAGTAAGGAAGGGTAGGAGCTCTGTGCGTGTCCTCTCAACACCCAGGGCCAAGGCGATAGTAGAAAGCTTTTTGATGCTGTTCAAGCGCAACTGGACATCCTCATTCCTTAATTCGTCGATTAAAACTGCAATAGGATACAGCGAATCGTCTCCTTCGGCTCcggccattttggattttagGCTTGGTTCCGCTtctactgcgcatgcgcaactTCAACCCTGCTCAGCAGTGGTCTGGGAAAGAAACCCCGC

Function

symbol description
ppp2r1b Predicted to enable protein phosphatase regulator activity. Involved in apoptotic process involved in morphogenesis and positive regulation of extrinsic apoptotic signaling pathway in absence of ligand. Located in membrane raft.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263563 True 639 lncRNA 0.55 4 8544912 8548374

Neighbor

gene id symbol gene type direction distance location
il4i1 il4i1 coding downstream 32710 8502694 ~ 8512202 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding downstream 46443 8491788 ~ 8498469 (-)
dixdc1a dixdc1 coding downstream 332840 8203662 ~ 8212072 (-)
LOC113532837 LOC108277602 coding downstream 407703 8122414 ~ 8137209 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 637054 7745299 ~ 7907858 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 14796 8563170 ~ 8613424 (-)
laynb LOC108277700 coding upstream 67063 8615437 ~ 8630154 (-)
zgc:162608 LOC108277432 coding upstream 97269 8645643 ~ 8647238 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding upstream 181568 8729942 ~ 8772841 (-)
scn3b scn3b coding upstream 226772 8775146 ~ 8796028 (-)
G222591 NA non-coding downstream 53628 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 302736 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 347705 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 382064 8162633 ~ 8162848 (-)
G222367 NA non-coding downstream 412208 8132363 ~ 8132704 (-)
G222852 NA non-coding upstream 489106 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1209784 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1254118 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1338642 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 1382982 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 66000 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1081413 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1891494 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2520559 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2740939 5797928 ~ 5803973 (-)
G222809 oaf other upstream 392644 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1128885 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1759676 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2159878 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2639876 11188250 ~ 11220656 (-)

Expression


Co-expression Network