G222809 (oaf)


Basic Information

Item Value
gene id G222809
gene name oaf
gene type unknown
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8941018 ~ 8946899 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU263800
TGATTTAAGACAATGCCAGTGTGAGCATTCACACTCGCGTCTTTATAGCACATTCTTGTGACTCTGTGACATTAATGCCCCGTTTCCCCAGACACCTCTGCCTTCCTTTGATGGATCCCAATTACCCAGAAGCAGTGCGGGCTGGTATAGACTAGGGTTGTGCAATAAGGGCTGAAAGGATAATTACGAATACAGtacttaatattattattattcagcctattttatcacactttatGATTCTATCATTTTAATACAACAGAAAACAGTTATTTCTTTCATAGATTATTCATTATAGTTAAAGCCGGCGTTACACTGTACAATATTTGGCCCGATTTTGTTCTCGCAGGCACAATCGAACAGTAGTCTTAGATCACATAATGTGACCTGCTTACTGGTGGCGGATTTTCTGCCACTGAGACCAAAGACAGCCAATGACAAAATTCTGGCAAACACAGCAAAGTGTCTTAAAATTTTGCTTAAAATTTCAGTGCAAGTGCTGCTATGACActtgtctaaaatccaccaatagcaGGATGGCATCTGATTATGCAAAACCCAGGACACAGCTACAAACACTTCGGAGATCGTTTATGCAATAAGCATACAGAATATTAACAAAACTTGTACCAAACTGTTATGCAGTTCCCAAGTCTGATCGGTCAGAAGGTACTGAccaattttctataacatttctaaccatttctatagtaacaattcattCAAAAGGACTTCTGTTGAGGACATGACACATGATCTAAGGCTAatattacactgttaaaaacgtgttaattaacaaaagaaaaacatataaatcattaatatcatcattaataaaaagcaggattatagtttatatttgttatagtTATTGGTAAAAATGCTTAATGTGtggtgtgtgtgtattagtgtgtatgtgttcctCATCTCACCTGTTTAAGGTCTGCCACGAAAGTGATGAGTGTGCCGTCAGCCTGCCTGTACTCCAGTGTGATGGAGTCTCTCTCACTGTCCgcctccagcagctcctcagtGATCCGGCCATCAGCGAGTCGAACCCTGACTTTCAGCTCGGAGCACAAACCAGCCCTGAGCACTAAAGCCCAGAGGTACAAGATGACTCCAACTGACCCCTGCGACCCGAACCGCGCCAACATCCCCAAGCGAGGCGAGAACGCGCCCTCAAAACGCAGAGCGCACAGAGCTGAGCCACACAAGCGTCTCCGAGTGAAGCGGCGGTGAACCGATTCGCCTCATTCCCCTgagttcccacacacacacacacacacacacacacacacacacacacacactaacaaacaaaccTCACAGGGGTTCTTTTTAAAGCTCTGCGTCCATGTTCTCACGTCAGTTTTATAAGAGAAACCCCTCGACtaccacacaaacaaacaaaaagttgtAAACTCAAAAATCTCAGACTTTGACTCAGTGAGCTGTGATAGAGACGTGGCtgaagccaaacacacacacacacacacacacacacacactgcttcaccGAGTGGCAG

Function

symbol description
oaf Orthologous to human OAF (out at first homolog).

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263800 True 1529 TUCP 0.43 2 8941018 8946899

Neighbor

gene id symbol gene type direction distance location
LOC113532830 LOC108277452,LOC107578747 coding downstream 126470 8799467 ~ 8814548 (-)
scn3b scn3b coding downstream 144990 8775146 ~ 8796028 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding downstream 168177 8729942 ~ 8772841 (-)
zgc:162608 LOC108277432 coding downstream 293780 8645643 ~ 8647238 (-)
laynb LOC108277700 coding downstream 310864 8615437 ~ 8630154 (-)
mcamb mcam coding upstream 586151 9533050 ~ 9567354 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding upstream 638745 9585644 ~ 9589292 (-)
kmt2a kmt2a coding upstream 648055 9594954 ~ 9635702 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 689672 9636571 ~ 9648239 (-)
pdzd3a LOC108277664 coding upstream 708683 9655582 ~ 9664634 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 392644 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 449734 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 698842 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 743811 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 778170 8162633 ~ 8162848 (-)
G222852 NA non-coding upstream 90581 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 811259 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 855593 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 940117 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 984457 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 462106 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1477519 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 2287600 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2916665 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 3137045 5797928 ~ 5803973 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 730360 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1361151 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1761353 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2241351 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 3441967 12388866 ~ 12407489 (-)

Expression


Co-expression Network