G222852


Basic Information

Item Value
gene id G222852
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9037480 ~ 9043751 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU263847
cccacacacccacacacacacacacacatcttatatatatttgtaagtACACATTTGTTCATCATTCTTGTTGGTCTAGCTGGGGTGATGCACAGGACTGGACGGTCCATTCTGGCTGGACTGAGGCAGTGCTGCAGGAACAAGCTAGGAGCAGACAGGACCGTCCATCTTCTCTAACTGACTTTAATGGAGGGCACACACTTTGTCAAAATGCTGCTTTGTTTTGCTCtccatcagtctctctctgcGCAAGATGCTGCAAAGTGTAGTGAAGGCCAAAGTGACCCCAGGTTAACTCGAGCCAGGAAAAGTCCACCCAGCTATTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU263847 True 328 lncRNA 0.48 2 9037480 9043751

Neighbor

gene id symbol gene type direction distance location
LOC113532830 LOC108277452,LOC107578747 coding downstream 222932 8799467 ~ 8814548 (-)
scn3b scn3b coding downstream 241452 8775146 ~ 8796028 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding downstream 264639 8729942 ~ 8772841 (-)
zgc:162608 LOC108277432 coding downstream 390242 8645643 ~ 8647238 (-)
laynb LOC108277700 coding downstream 407326 8615437 ~ 8630154 (-)
mcamb mcam coding upstream 489299 9533050 ~ 9567354 (-)
c1qtnf5 c1qtnf5,LOC107690457,LOC107601727 coding upstream 541893 9585644 ~ 9589292 (-)
kmt2a kmt2a coding upstream 551203 9594954 ~ 9635702 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 592820 9636571 ~ 9648239 (-)
pdzd3a LOC108277664 coding upstream 611831 9655582 ~ 9664634 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 489106 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 546196 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 795304 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 840273 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 874632 8162633 ~ 8162848 (-)
LOC117599042 NA non-coding upstream 714407 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 758741 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 843265 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 887605 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 991991 10035742 ~ 10035982 (-)
G222809 oaf other downstream 90581 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 558568 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1573981 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 2384062 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 3013127 6021145 ~ 6024353 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 633508 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1264299 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1664501 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2144499 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 3345115 12388866 ~ 12407489 (-)

Expression


Co-expression Network