G223353


Basic Information

Item Value
gene id G223353
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9931356 ~ 9978560 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU264445
agCACTAGTATATAGTGAATGTTCAGTATATCTTAATCTTAATTTCACCTTGTCAGTGTTTAGGCGTTCTCCAGACTCCAAGATGAACACACTCTGATCCACAACACTGAGGCCACACAGTGAACCAGGATGAGCTGTGAGCTCGAGACTGTTCTTCTCACCAGGAACTGCTTTAGAGGGAGAGAACTGTAGCGAAACCT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU264445 True 200 lncRNA 0.45 2 9931356 9978560

Neighbor

gene id symbol gene type direction distance location
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding downstream 65025 9839316 ~ 9866331 (-)
LOC113532826 LOC108277820 coding downstream 96269 9823069 ~ 9835087 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding downstream 108669 9717745 ~ 9822687 (-)
nlrx1 nlrx1 coding downstream 256910 9664911 ~ 9674446 (-)
pdzd3a LOC108277664 coding downstream 266722 9655582 ~ 9664634 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 62182 10040742 ~ 10070727 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding upstream 184847 10163407 ~ 10208971 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding upstream 233026 10211586 ~ 10218371 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 342271 10320831 ~ 10342885 (-)
il15l NA coding upstream 367030 10345590 ~ 10356732 (-)
LOC117599021 NA non-coding downstream 35595 9887016 ~ 9895761 (-)
LOC117599044 NA non-coding downstream 124847 9802492 ~ 9806509 (-)
LOC117599042 NA non-coding downstream 172390 9758158 ~ 9758966 (-)
G222852 NA non-coding downstream 887605 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1382982 8544912 ~ 8548374 (-)
G223408 NA non-coding upstream 57182 10035742 ~ 10035982 (-)
G223410 NA non-coding upstream 60284 10038844 ~ 10039358 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding upstream 103021 10081581 ~ 10082117 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding upstream 111083 10089643 ~ 10089990 (-)
G223449 NA non-coding upstream 122399 10100959 ~ 10101166 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 218297 9677259 ~ 9713059 (-)
G222809 oaf other downstream 984457 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1452444 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2467857 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3277938 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 329490 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 729692 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1209690 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2410306 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2456646 12435206 ~ 12638725 (-)

Expression


Co-expression Network