G223410


Basic Information

Item Value
gene id G223410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10038844 ~ 10039358 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU264516
AAAGTGCCATGCCATAACCACATCAATACAGCATTTtagtattaataaaaacaacataacatacataatacatacaaTACAAATCTAAAATTGCAGGTTACATAAGATCACcaactttataaaaataaattatctgTCATCAGAGCAAGCAGAATTCATTAACCAAATGATCATAGCCACAAGGTAGTCTTTAATTCGTTTAGTCCTAGCTCTTGGCTGAAAGTCAGTGCATAAGGGATGATCCAAAGTACAAAGAATGGCTTGGGCCTTAATCAGAACATGCATATAAACTATGTCAGTAAGACAGGTCTGTTCCTCTCCAGTAATTTTCCCAGCCATCTTCGCAAGGCTGGCTAATCTATTTTGTTTGACAAGGTAAGAGTTCCATGTCATGCTACTCCTTAACCCTGAAATATCGCCTAAACCTGTACTGAACAAAATAATGACAAACCTGTTTCTCAAAACCCTACTATAATGGAAGCCTAGGGGCAGGTGCtgaaatcataaataaatta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264516 True 515 lncRNA 0.36 1 10038844 10039358

Neighbor

gene id symbol gene type direction distance location
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding downstream 172513 9839316 ~ 9866331 (-)
LOC113532826 LOC108277820 coding downstream 203757 9823069 ~ 9835087 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding downstream 216157 9717745 ~ 9822687 (-)
nlrx1 nlrx1 coding downstream 364398 9664911 ~ 9674446 (-)
pdzd3a LOC108277664 coding downstream 374210 9655582 ~ 9664634 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding upstream 1384 10040742 ~ 10070727 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding upstream 124049 10163407 ~ 10208971 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding upstream 172228 10211586 ~ 10218371 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 281473 10320831 ~ 10342885 (-)
il15l NA coding upstream 306232 10345590 ~ 10356732 (-)
G223408 NA non-coding downstream 2862 10035742 ~ 10035982 (-)
G223353 NA non-coding downstream 60284 9931356 ~ 9978560 (-)
LOC117599021 NA non-coding downstream 143083 9887016 ~ 9895761 (-)
LOC117599044 NA non-coding downstream 232335 9802492 ~ 9806509 (-)
LOC117599042 NA non-coding downstream 279878 9758158 ~ 9758966 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding upstream 42223 10081581 ~ 10082117 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding upstream 50285 10089643 ~ 10089990 (-)
G223449 NA non-coding upstream 61601 10100959 ~ 10101166 (-)
G223676 NA non-coding upstream 122425 10161783 ~ 10163372 (-)
G223766 NA non-coding upstream 373098 10412456 ~ 10412680 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 325785 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1091945 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1559932 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2575345 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3385426 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 268692 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 668894 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1148892 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2349508 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2395848 12435206 ~ 12638725 (-)

Expression


Co-expression Network