LOC113533081 (LOC108277503,LOC108425821,LOC103022652)


Basic Information

Item Value
gene id LOC113533081
gene name LOC108277503,LOC108425821,LOC103022652
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10308050 ~ 10312516 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU264952
GGCACCTGTTCAAGAGCTCTCTGGTTTATGTGTGCGCGTCCTTGTATGGCCCCACGCTAGACAAGCAGCAGGACGTTTCGCAGAGAACAGTCGAACATGAGACACTTGCTGAGCCTTCAACGAGTGGCCACCAAGGCCTTCAGTACAACAGCCAGGCAGATGAAGAACAGGGTTCCAGAGAAGCAGAAGCTTTTCCAGGAGGACAATGGTCTGCCTGTCCACATCAAAGGGGGAAGCACTGATATGCTACTCTACCGAGTAACCATGACCCTTACTATTGTTGGCACTGGATTTTCCTGTTACTGGCTTCTGGTGGCCTCGATGCCCAGACGCAAAGCTGATTAAGAAGAGGCTCTGAAAGAACTGTTCATGTGTCATATGAATTCAGTTAAAATAACTTTCATGTTGTACAGACAATTCTGATTAAAGAACATCTtgatgtatagtgtgt
>XM_026924926.2
TAGTTTGTTCTCTCCTGTACACCATACTTGGCACCTGTTCAAGAGCTCTCTGGTTTATGTGTGCGCGTCCTTGTATGGCCCCACGCTAGACAAGCAGCAGGACGTTTCGCAGAGAACAGTCGAACATGAGACACTTGCTGAGCCTTCAACGAGTGGCCACCAAGGCCTTCAGTACAACAGCCAGGCAGATGAAGAACAGGGTTCCAGAGAAGCAGAAGCTTTTCCAGGAGGACAATGGTCTGCCTGTCCACATCAAAGGGGGAAGCACTGATATGCTACTCTACCGAGTAACCATGACCCTTACTATTGTTGGCACTGGATTTTCCTGTTACTGGCTTCTGGTGGCCTCGATGCCCAGACGCAAAGCTGATTAAGAAGAGGCTCTGAAAGAACTGTTCATGTGTCATATGAATTCAGTTAAAATAACTTTCATGTTGTACAGACAATTCTGATTAAAGAACATCTtgatgtatagtgtgtataaaataaa

Function

GO:

id name namespace
GO:0005746 mitochondrial respirasome cellular_component
GO:0009055 electron transfer activity molecular_function
GO:0004129 cytochrome-c oxidase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264952 False 451 TUCP 0.47 4 10308060 10312487
XM_026924926.2 True 490 mRNA 0.46 4 10308050 10312516

Neighbor

gene id symbol gene type direction distance location
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding downstream 89679 10211586 ~ 10218371 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding downstream 99079 10163407 ~ 10208971 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding downstream 237323 10040742 ~ 10070727 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding downstream 441719 9839316 ~ 9866331 (-)
LOC113532826 LOC108277820 coding downstream 472963 9823069 ~ 9835087 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 8315 10320831 ~ 10342885 (-)
il15l NA coding upstream 33074 10345590 ~ 10356732 (-)
plekhg2 plekhg2,LOC106612677 coding upstream 45033 10357549 ~ 10400261 (-)
spint2 LOC108277494 coding upstream 100776 10413292 ~ 10426287 (-)
si:dkey-182i3.11 LOC108277482 coding upstream 170635 10483151 ~ 10488560 (-)
G223676 NA non-coding downstream 144678 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 206884 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 218060 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 225933 10081581 ~ 10082117 (-)
G223410 NA non-coding downstream 268692 10038844 ~ 10039358 (-)
G223766 NA non-coding upstream 99940 10412456 ~ 10412680 (-)
G223808 NA non-coding upstream 247910 10560426 ~ 10611848 (-)
G223827 NA non-coding upstream 323640 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 443982 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 757168 11069684 ~ 11069958 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 594991 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1361151 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1829138 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2844551 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3654632 6619172 ~ 6653418 (-)
appbp2 appbp2 other upstream 395736 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 875734 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2076350 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2122690 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2608447 12920963 ~ 12999031 (-)

Expression


Co-expression Network