G223766


Basic Information

Item Value
gene id G223766
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10412456 ~ 10412680 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU264978
GTATATGTAAAGTATGCTTATAAATGCAAATGCGGTTCAGTGCAAAAGTTGGTTTGTGGGTCgaaaatgtgtgtgtcctgcaaAAAGACaaccaaaacagaaaaatagtttTCCCATGACCCTCAGTCTCCAGACTTGATTTGAAGACAGCAGTATCTGTTAAAGCTCTTAAGAGGATACAAAAGAGGTTGGAGGCAGCTCTGAAACCAATAAATGTCTTGCTGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU264978 True 225 lncRNA 0.40 1 10412456 10412680

Neighbor

gene id symbol gene type direction distance location
plekhg2 plekhg2,LOC106612677 coding downstream 12195 10357549 ~ 10400261 (-)
il15l NA coding downstream 55724 10345590 ~ 10356732 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding downstream 69571 10320831 ~ 10342885 (-)
tnfaip1 tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792 coding downstream 194085 10211586 ~ 10218371 (-)
sgsm2 sgsm2,LOC108277483,LOC107728220 coding downstream 203485 10163407 ~ 10208971 (-)
spint2 LOC108277494 coding upstream 612 10413292 ~ 10426287 (-)
si:dkey-182i3.11 LOC108277482 coding upstream 70471 10483151 ~ 10488560 (-)
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding upstream 126889 10539569 ~ 10542916 (-)
ercc2 ercc2,LOC107743694,LOC107601732 coding upstream 147877 10560557 ~ 10570176 (-)
zgc:154093 LOC108278387 coding upstream 159955 10572635 ~ 10574319 (-)
G223676 NA non-coding downstream 249084 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 311290 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 322466 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 330339 10081581 ~ 10082117 (-)
G223410 NA non-coding downstream 373098 10038844 ~ 10039358 (-)
G223808 NA non-coding upstream 147746 10560426 ~ 10611848 (-)
G223827 NA non-coding upstream 223476 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 343818 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 657004 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 692891 11105571 ~ 11168668 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 99940 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 699397 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1465557 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1933544 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2948957 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 295572 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 775570 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1976186 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2022526 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2508283 12920963 ~ 12999031 (-)

Expression


Co-expression Network