G223808


Basic Information

Item Value
gene id G223808
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10560426 ~ 10611848 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265027
ggAAATAACAAACTTTGCCATGGAACTTCACTATCTTGTCATAATTGCAGGCAGAAAAAGGTGAGTGTGTTTGCCTGGAGACTGTATAAACTCacaaaaaataatgacaatgcCTGAGCTCCTCAAAGGAGTGCTTAttgttcaaaacatttgttttttttttttttttttttttaactccattTTGGTCATTTGCTAGTTCTCACACTCTAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265027 True 213 lncRNA 0.34 2 10560426 10611848

Neighbor

gene id symbol gene type direction distance location
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding downstream 17510 10539569 ~ 10542916 (-)
si:dkey-182i3.11 LOC108277482 coding downstream 71866 10483151 ~ 10488560 (-)
spint2 LOC108277494 coding downstream 134139 10413292 ~ 10426287 (-)
plekhg2 plekhg2,LOC106612677 coding downstream 160165 10357549 ~ 10400261 (-)
il15l NA coding downstream 203694 10345590 ~ 10356732 (-)
bbc3 NA coding upstream 1798 10613646 ~ 10623137 (-)
rad1 rad1,LOC107601739 coding upstream 21016 10632864 ~ 10635825 (-)
tmem97 tmem97 coding upstream 28013 10639861 ~ 10641033 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding upstream 30390 10642238 ~ 10651210 (-)
usp32 usp32,LOC108425843 coding upstream 39503 10651351 ~ 10693271 (-)
G223766 NA non-coding downstream 147746 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 397054 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 459260 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 470436 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 478309 10081581 ~ 10082117 (-)
G223827 NA non-coding upstream 24308 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 144650 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 457836 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 493723 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 782872 11394720 ~ 11397828 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 247910 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 847367 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1613527 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2081514 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 3096927 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 96404 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 576402 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1777018 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1823358 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2309115 12920963 ~ 12999031 (-)

Expression


Co-expression Network