G223827


Basic Information

Item Value
gene id G223827
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10636156 ~ 10636794 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265054
CTGAAGGGGAGGTCTGATAGCATCACTGGGCCCAGAGGGTTCACACTGAAGGGGAGGTCTGATAGCATCACTGGGCCCAGGGGGTTCACACTGAAGGGGAGGTCTGATAGCATCACTAGGCCCAGGGGGTTCACACTGAAGGGAAGGTCTGATAGCATCACTGGGCCCAGAGGGTTCACACTGATGGGCAAGGAGCAGGCTCAGGGGCCTGATAAAACtgataaaactgataaaaaatagCCTACACAACTTTTAAGATGTC

Function

NR:

description
PREDICTED: DNA mismatch repair protein Mlh1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265054 True 262 lncRNA 0.53 3 10636156 10636794

Neighbor

gene id symbol gene type direction distance location
rad1 rad1,LOC107601739 coding downstream 331 10632864 ~ 10635825 (-)
bbc3 NA coding downstream 13019 10613646 ~ 10623137 (-)
zc3h4 zc3h4,LOC107601737,LOC107743691,LOC106580865 coding downstream 39445 10584839 ~ 10596711 (-)
zgc:154093 LOC108278387 coding downstream 61837 10572635 ~ 10574319 (-)
ercc2 ercc2,LOC107743694,LOC107601732 coding downstream 65980 10560557 ~ 10570176 (-)
tmem97 tmem97 coding upstream 3067 10639861 ~ 10641033 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding upstream 5444 10642238 ~ 10651210 (-)
usp32 usp32,LOC108425843 coding upstream 14557 10651351 ~ 10693271 (-)
pipox pipox coding upstream 189495 10826289 ~ 10838128 (-)
gemin4 gemin4 coding upstream 380358 11017152 ~ 11023330 (-)
G223808 NA non-coding downstream 24308 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 223476 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 472784 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 534990 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 546166 10089643 ~ 10089990 (-)
G223855 LOC108277744 non-coding upstream 119704 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 432890 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 468777 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 757926 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 786767 11423561 ~ 11423868 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 323640 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 923097 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1689257 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2157244 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 3172657 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 71458 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 551456 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1752072 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1798412 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2284169 12920963 ~ 12999031 (-)

Expression


Co-expression Network