G223855 (LOC108277744)


Basic Information

Item Value
gene id G223855
gene name LOC108277744
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10756498 ~ 10761733 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265085
TTGTAATACCCATCATGTATCATACACgtcaagtatcatgatatgatatttttgttatatcacCCACCCCTAGTCTAAGAGTGAAAAATTGAGGGTGAAGTATTTTAGTTTTAGGAGGGCAAAAAACAGATAAGCTTTACTGGGAGAAGACTCAAATCCAGAGCAGAGGAAAAGAATTAGGCTGCAAATAAAGGGAAATGAGAAATAACActaaaggagaggaaaaaagacgACAATAATTACAGATGCAAAGAAGATCTGCTCCAATCGTCTTTGAGCTGCTTCGGTAGGACTCGGTGGAGGGCTCTCCTACAAGTCAGACCACCGAAAGGAAGTGTGGCTGTGAATGCTATATGGCTACAGTGTGTGACCACATGGTTCGTTAGACCTCTTAGTGTAGATTAACGCAACAGAGCCTACCACATGTTAGTTTTGTCTATTCTAATGCTTTTCATTCCTGCAATGTGCATCAAGTGCGCACCCAACAGCTGCAAAGttgagcatgcacacacacacaagcaaacaaacacaccTTTTGGATCACAGGTGGATGAGACTCTTTAGATATGATGCCACGACAAGAGTTCCCAGTTTGTGTTGAGGACAGACGTGATATTGTCTTCACCTTTGAACattatgcatatacacacatagtaCATGAAACACACTCGCATACACAGTATGTGCATAAGGTCAGTGTGTTGCCATATTCAATTGCACTCATTTTCCAATAAATGAACCTGTGATAAAACAAGCCCATATCAGCCAGATTTCAACATGCAATGCACCACTCCAAGCTAAATAATTCACTACGAAAAGGCTTCATACAGACCACGCCACACATCAACATACGTGAATTATGTTTCAGTCGGCAGATTTCCTCTCTATTTTCTCCCTCATGCACAAAGCGTGTAAGCACCATTAACTGCCTTGTTAGGCCCACACTCCCATTCTAACTCCGTGTTGGTCACACAGATTCAGAGGCCTGCCCTTGACAACAGAGCCACAAAGCCTTACTGCTACGGAGAGGTTCTAGCTCACAGGCTAGGAAGAACTAACTGTTGTTAGTCCAAGAAGCAGATTTCTGTTAAACATGGACAGACTCCAAATAACATGGTCCAAATAGAAGTGACAAGACTGCTAACAAGAAACTAAATCCTAACAAAAATCCTACGACGGCTGGTGTGACAACAGCTTTATAAAAAGCAGCTCTTTTCACTCATTAAAGAGACCACATTCCCGTCTTTGTGTTTTCTATTAGATCACATGACAGAGGCTTGTGAATTTTCCAGTCAAAGTTCAACTTGATAAAGATAAAGAAGGCTGACGTGAACATAACTGCTACACAAACAATTGCATCTTTCACATCCTAtttcctttccccttcagtgagtTGCCTTTTCTGCCAAGAAaatctttattaatttttgttctgagaaaaacagaaaattgaaGGCCTCCTTAGCAAAATCATAAATGTTATCCCTAAACCACAGATTTCAGTCATAacccaagtaaaaaaaaaattaaataagtagAATTCGACACCAACAGCATCAACGGGGATGTCTCCGCCACCAAAAACGGGCCTTGTGCTCctgaacatgaacataaaaGTAACATCTCtgtaaaacaaactgaaaactaTTTCAAGCATTTGACCTTACCGTGATCATGACCTTATTTGAATCAATTACAAAATCTAaccagttcatctgctggttacaatgataattccatacaaatcctacaaacattcaaccactggTTGTTGAGATATTGAGCTAACAAGAATTTCAGACGGTCACACAGACAATCTAAAACATGTGATACCCATGGCAAATTTACTCTGGCAAATAACCATTCTCCCACCTGTTGGGAAAACAATTTGCTCTTGCTGTACAAAGTAAGTGATGTTAGAACCATTAAAATCACGTGTTAATGCAAAGAAGTTAAATCTTCAAAACTTTGTACAAACATGCTAGTTTAGTTGCCCTGAATTCTCACACGCAGTCCaacaatgttaaaatgtttcatgcagcaaaaatgcaggtagtacCTTTAGGCTCATTGTAGCCAGTTGTTTGGGGGTTGGGGTGAACCTGGGCGAAGTGGCTAACGGTTCAGGACATGAGTTACTGGTGGATTTGACAGGAGTAAGAACTGGAGGTACTTTGGAAGTTACAGGTGCTGGCTTGGGCGCAATGGGTACAGGTTTAGGATCTGGAATGGATACTGGTGGTGCAGAAACTGTAGGGGTTTTAGGGACTTCAGTAGCTTTGGGAATAAAACCAGCCAGATGAACTATGGGGGAAGGTTTTGGCACAGGTACTCTCTTGGGAGCTGGGATGAATCCAGCTGGTGGGGTGACAGGTGACTTAACTGGAGAGGAAGTAGCAGGAGACGTAGGAGGAGAAGATGCCAAAGTCTTTTCCTCTGGCTTTGAATGCATACTCTGACTGGCTTCTGGTTTCTGCACACTCTTCCCTTTTGCTGCTGAGCTTTCTTTGTCTTCAGTGTTCTCCTCCTTCTTGTGCTCTTGTTTTTCTGCAGCCACCTCCTTACAGGGACGAGGTCGTGGATCCCTGGTTCTGCCTCGGCTCATCAGGCTGGCTAGTCCTGTGGAGATGTCatctttctcctccttctttATGGAGTCATGTTTAAAAGAGAACATGGGCATCCTTGTGACCTTGGGCACAGATGCTGGCATAGGTTTGGGTGGCTCAGGGGCAGAATGGGGTATTACAGGTGCTGTTGAAGGTTTGGGTGGCTCAGCGGTGGATTTTGGAGGCTCAGTGGGAGTCTGACAAAGAGTAGTGGACATAGAAGCAGAAGCAGTGTCTTCATCTGCAGGTTCTACCCTCCTCACCACTCTCTTCACCACCTTCACAACCTTCTTGCGAGTTACACCATTCGGGTCCTCTGCCACCTCTGGCTGTCGGGCACTGACTGTGGTTGTGGTGTTGCTAGCTAAAGGACCATTGGTCTTGCTATCTCCATTCAGGACAGGCTCACAACTCTGTAAATCTGGACGGGGCTCAGGGCTTTTGAAGCGCTCTTGGATGTTGGATGGTTCTAGGTTCTTGATGATAGAAAACCTGTTTCTCGTGGGTGAAGGGCTCTTGAATCGTTCCCGGATCTGGGGCTGGGACTGGGCATGTCCAGGAGGATCTCGAGCAGGCTGGGGGCTCTTGGTACGCAGCAGGACTTTAGCAGGCTCCAGACAGGGTACTGACTGGGAGCGACTACTGAGACTGCCATTACTATCTGACTACTCAGCCAGATGGCATTGGGTGGGGAACAGGAGTGTTAAAGGACACATATTAATAAATTCCAGAGAAATGATACACTACTTATAATAAATACTGATAAGAGGAATGCAAAGTACTTCTGAAAATACATCTTAGCCTTAGACCTTGAAAAGCACATAATCTAAATATTACTAACAGGCTCATCGAGCTAAAGAGCCAGGATTGTGCTCAAGTTCCTGTTCATGCATTACTGAACTGCCTCATTTGCCCTGTCACCACTGAGGTCAATGACACAAGGAATAACAATCAACAAAGTAGGTCAAAGTGAAGCAGGTCATTGACCAATAGTGACACACTGCCCTATATTGAACCAAGGTCTTAAGCCAGAATACTGATATAAGACATACAGCTTAGAATGGCATGCAGATCTAAGCCTAGGACTTGCATTTCCATACCTCATTTGGCTTGCACTTATACAGCAGTCCAGCAGACCTCATTCACTGCCAAAAGCTACACTAAACCCATTCGAATAAATCATGACTGAGATGACATATCTGTAGAATAACACTTCACTTACTAGCTAACCAGTGTAATTACAAGCACCATTTAACATGGTTTACATGACAGTCTCCCTGAGGCCTTTGTGGAATCTATGATGAACAGATCTAATCCTTGTGCAGCTCATTCATGCACTTTATGGCTCTGCATGTAGCTTACTATGTGATGCTAAAGCCTATAGCTTGATAGACTTAACCATAAGAGATATAAGCAGCCTGCAGTACTACAAAAGACTCAGCAAATCATTTCAGTGTTGTGCTGACTGTGCTACAGTAAGGTAAGAGCATTATTTCTGAATCTCAAAAGCAGGTAATTTCAGTTGTTCAACTCAGTGAACACAATATCCAGTTCTGTGTTAATCAAAGGTTCTAAGTAAAATGGATTGTGCAACAAGGAGTAATATAAAGCATTATAGGCTATACAAGAATGTTTCCTCTAGAGCCCCAGTAAAATCTGATTCCTGTCAGTAAGTAGTGATGGTTTTTCACAGCACTTACACTTTCTTTCAAACTCTTTGGGGCTGCCTTGGTCTCTTCTTTAACCTTTTGCTCCCAGAAGGAAAAGCGTGATGAGAAAGCCATGGTGGTGACGTTGCGCTCATGAGCTGGGCCGGCTAAGGAGCAACAGGGGATGAATGGCAGGGAGAGCTGTTATGTGACAGCCAAGAGATAAGATTCCGAGCACAACCAATTCTGGTATTGAAGACGTCAACCTTGGACCAAGCTTCAAGTAAGAATGTCTTCACGGCACTAGAGGAAAGAAGAGATACTGAACCTGCTGTGTAAAGTGAGGTTTAGAGAGTGAAAAgggtaaggaataacacatgacagggtgtgctgttatagaaaaattatcagcgatggggtggtgtaatgCCGTTACCACctcaaaatttattattttcctacaacaggagtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265085 True 4730 lncRNA 0.43 2 10756498 10761733

Neighbor

gene id symbol gene type direction distance location
usp32 usp32,LOC108425843 coding downstream 63227 10651351 ~ 10693271 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding downstream 105288 10642238 ~ 10651210 (-)
tmem97 tmem97 coding downstream 115465 10639861 ~ 10641033 (-)
rad1 rad1,LOC107601739 coding downstream 120673 10632864 ~ 10635825 (-)
bbc3 NA coding downstream 133361 10613646 ~ 10623137 (-)
pipox pipox coding upstream 64556 10826289 ~ 10838128 (-)
gemin4 gemin4 coding upstream 255419 11017152 ~ 11023330 (-)
tmem199 tmem199,LOC107592604 coding upstream 302868 11064601 ~ 11068228 (-)
trarg1a tusc5 coding upstream 412269 11174002 ~ 11185519 (-)
abhd15a LOC108278383 coding upstream 473907 11235640 ~ 11243992 (-)
G223827 NA non-coding downstream 119704 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 144650 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 343818 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 593126 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 655332 10100959 ~ 10101166 (-)
G224086 NA non-coding upstream 307951 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 343838 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 632987 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 661828 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 662896 11424629 ~ 11424859 (-)
appbp2 appbp2 other downstream 35165 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 443982 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1043439 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1809599 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2277586 8404829 ~ 8478912 (-)
aipl1 aipl1,LOC106612843 other upstream 426517 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1627133 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1673473 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2159230 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 2179177 12940910 ~ 13007559 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) G1916759 NA non-coding NC_048588.1 CM023242.2 24797804 ~ 24799841 (+)