G224086


Basic Information

Item Value
gene id G224086
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11069684 ~ 11069958 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265332
agtttgtatggcccccacgtgcttgtatgcatgcctgacaatgtcggggcatgctcctaatgagacgacggatggtgtcctggggtatttcctcccagatctggaccagggcatcactgagctcctggacagtctgaggtgcaacctggcggcgtcggatggaccgaaacataatgtcccagaggtgttctattggatttaggtcaggcgagcgtgggggccattcaatggtttcaattccttcatcctccaggaactgcctgcatactctcgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265332 True 275 lncRNA 0.55 1 11069684 11069958

Neighbor

gene id symbol gene type direction distance location
tmem199 tmem199,LOC107592604 coding downstream 1456 11064601 ~ 11068228 (-)
gemin4 gemin4 coding downstream 46354 11017152 ~ 11023330 (-)
pipox pipox coding downstream 231556 10826289 ~ 10838128 (-)
usp32 usp32,LOC108425843 coding downstream 376413 10651351 ~ 10693271 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding downstream 418474 10642238 ~ 10651210 (-)
trarg1a tusc5 coding upstream 104044 11174002 ~ 11185519 (-)
abhd15a LOC108278383 coding upstream 165682 11235640 ~ 11243992 (-)
exo5 exo5 coding upstream 203805 11273763 ~ 11279974 (-)
rflnb rflnb coding upstream 211373 11281331 ~ 11284623 (-)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 217647 11287605 ~ 11308511 (-)
G223855 LOC108277744 non-coding downstream 307951 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 432890 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 457836 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 657004 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 906312 10161783 ~ 10163372 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 35613 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 324762 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 353603 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 354671 11424629 ~ 11424859 (-)
G224370 NA non-coding upstream 394290 11464248 ~ 11464691 (-)
appbp2 appbp2 other downstream 348351 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 757168 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1356625 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2122785 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2590772 8404829 ~ 8478912 (-)
aipl1 aipl1,LOC106612843 other upstream 118292 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1318908 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1365248 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1851005 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1870952 12940910 ~ 13007559 (-)

Expression


Co-expression Network