aipl1 (aipl1,LOC106612843)


Basic Information

Item Value
gene id aipl1
gene name aipl1,LOC106612843
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11188250 ~ 11220656 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265559
GGACAGACTTCGGGAGGAGATGTGAACGCGGAGAAGACGGACACactgagggagagacagactAATGGAGCAATCTTATTTAATCCTGTTAATCACAAGGTTGATCCTCTCCATCTCTTGGAACGTCCAGTGCTTGTCCGGATGCCCACTGGCTGACCCGCAGC
>XM_026924673.2
TCTTAATCCTAATAGTCCAACTCAAAGTGAAGTTGTTGCTCACTAATGTGACACATGCACAAAATGCAGCTAGCTGTGCTGAGCTAATCAGTAAAGCCCATCTCTGTAATCTTATGAAAGTTGTAAAAGTAGATGGCTTGTTTGGATCGCTGCTCAGCGGGAGCTCTGTGAGTACACTCTCCAGCTGTCAGCCACATGTGTACACCGGCGGCACTGAGTCCATGGGCCTCTGCTCTCTCCTGTTAGCATGGACCACCATGGAGGCTGACACAGAGGGACAAACACTCGTCTGTCTCCCAGCATATTCCAGACATTTCTGGCAACACTTCAGACTTTAATACTCACCTATACAGTGCAACCATACTTGTCTGGAAACAATTGCCTCTACATATATACAACATGGTGGACAGTCTGCTGCTTGGAGTGGAGGGAATCAAAAAAACTATCTTGTATGGAGGAACCAGTGAGATTCCCAAATTCATCACAGGATCCAAGGTGACTTTCCATTTCCGAACCATGCTGTGCAATGACGATCGCACGGTGCTGGACGACAGTAAGAAGGTCGGGGTGCCAATGGAAGTGGTGATCGGGAACATGTTCAAGCTGGATGTATGGGAGACTCTGCTCAAGTCCATGCGCATAGGAGAAGTTGCAGAGTTCTGGTGTGACATAATTCACACTGGCCTGTATCCCATGGTGGCAAAAAGTCTTCGGCGCATTGCAGAGGGAAAAGATCCAGTGGACTGGCATATCCACACCTGTGGCATGGCTAATATGTTTGCGTTTCACACGCTGGGTTACGATGACCTGGATGAGCTCCAGAAAGAACCCCAGCCTCTCATCTTTGTGCTAGAACTGCTAAAGGTTCAGCAGCCAAGTGAGTATCACAGGGAGTCGTGGGCGATGAATGATGAGGAGAGACTAAAGGCTGTTCCTGTGCTCCATGGCCAAGGGAACAAACTGTACAAACAGGGTCGCTTTGAGGAGGCCACAAACAAGTACAAGGAGGCAATCCTTTGCATCAAGAATGTTCAGTCAAAGgAAAAGGCCTGGGAGGTCCCCTGGCTAAAGCTTGAGAAAACGGCCAATACTCTCACACTCAACTACTGCCAGTGTCTGCTGCGCATGCAGGAGTATTACGAGGTCATTGAGCACaccagtgacatcatcaaccaGCATCCTGGCGTGATGAAAGCTTTCTACCTGCGGGGAAAAGCACACACAGAGGTGTGGAATGAAGCTGAGGCTAAGGCTGACTTTCAGAGGGTGCTGGATCTAGACCCAAATATGAAGAAGTCAGTGAAGAAAGAGCTAGCTGTTCTCAACATGCGTatggaggagaagagagaggaggacaGACAAAAATACAAGGGCATGTTCACAGCGACAGGAACAGGGcaaacaagtccaggacaaacACAGGAACAGGGGAATACGGACCAAGAAACAGCAGAACAATCAACTACTGACCAAGAACCTTCCAAGCAAGTGGCTCTAGAGCAAGCACCTACACAACAAGAAACATCATTGAAGGAAACTCCAGATAAAGACACTCTAGAGCAGGAAACTCCAGAGGCAAACAATCCAGACGGGAAAACAACAGAGGAAGAAACTTCAGAGCAGGAAACTCCAGAGAAGAAAACACTAGAGCAAGAAACTCTAGAGCAAGAAATTGCAAATAATAAATCTCCAGTGTTAGCAACTTCAGAGCAGGAAGCTGTAGAGAATGAAACTCTAGAGAATGAAACTTCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGCAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTTCAGAGAAAGAAACTTCAGAGCAGGAAATTCTAGAGAATGAAACTCTAGAGAAAGAAACTTCAGAGCAGTTACTCCTGTAAAGGAATTGCAGGACAAGAAAATACATCACAGTTAACCTCAACTGTTGCACAAACACCTGCTGAAAAACAGACACCAGAACACCACAAATAATGACTGCAGTCAGTGATGAAGATGCTTAATGAAACAGTCTAACAGCCATTTGCTCCATTTGATCCCCATTATTGGAATTTATCTAATTTATTAGGGTATGAAATGAACATATTGCTTAACTTTCAGGGGTGATTAAAATGGTGTCTGATATTTGAtaaaatatagtgaatataataaaaataatataataaaaatataatagaataatacTATGGCATAATATTTAGATTAATGATTTTTCATCAGTGAAATTTTGGG
>XM_034310890.1
TCGGGAGGAGATGTGAACGCGGAGAAGACGGACACactgagggagagacagactAATGGAGCAATCTTATTTAATCCTGTTAATCACAAGGCAACACTTCAGACTTTAATACTCACCTATACAGTGCAACCATACTTGTCTGGAAACAATTGCCTCTACATATATACAACATGGTGGACAGTCTGCTGCTTGGAGTGGAGGGAATCAAAAAAACTATCTTGTATGGAGGAACCAGTGAGATTCCCAAATTCATCACAGGATCCAAGGTGACTTTCCATTTCCGAACCATGCTGTGCAATGACGATCGCACGGTGCTGGACGACAGTAAGAAGGTCGGGGTGCCAATGGAAGTGGTGATCGGGAACATGTTCAAGCTGGATGTATGGGAGACTCTGCTCAAGTCCATGCGCATAGGAGAAGTTGCAGAGTTCTGGTGTGACATAATTCACACTGGCCTGTATCCCATGGTGGCAAAAAGTCTTCGGCGCATTGCAGAGGGAAAAGATCCAGTGGACTGGCATATCCACACCTGTGGCATGGCTAATATGTTTGCGTTTCACACGCTGGGTTACGATGACCTGGATGAGCTCCAGAAAGAACCCCAGCCTCTCATCTTTGTGCTAGAACTGCTAAAGGTTCAGCAGCCAAGTGAGTATCACAGGGAGTCGTGGGCGATGAATGATGAGGAGAGACTAAAGGCTGTTCCTGTGCTCCATGGCCAAGGGAACAAACTGTACAAACAGGGTCGCTTTGAGGAGGCCACAAACAAGTACAAGGAGGCAATCCTTTGCATCAAGAATGTTCAGTCAAAGgAAAAGGCCTGGGAGGTCCCCTGGCTAAAGCTTGAGAAAACGGCCAATACTCTCACACTCAACTACTGCCAGTGTCTGCTGCGCATGCAGGAGTATTACGAGGTCATTGAGCACaccagtgacatcatcaaccaGCATCCTGGCGTGATGAAAGCTTTCTACCTGCGGGGAAAAGCACACACAGAGGTGTGGAATGAAGCTGAGGCTAAGGCTGACTTTCAGAGGGTGCTGGATCTAGACCCAAATATGAAGAAGTCAGTGAAGAAAGAGCTAGCTGTTCTCAACATGCGTatggaggagaagagagaggaggacaGACAAAAATACAAGGGCATGTTCACAGCGACAGGAACAGGGcaaacaagtccaggacaaacACAGGAACAGGGGAATACGGACCAAGAAACAGCAGAACAATCAACTACTGACCAAGAACCTTCCAAGCAAGTGGCTCTAGAGCAAGCACCTACACAACAAGAAACATCATTGAAGGAAACTCCAGATAAAGACACTCTAGAGCAGGAAACTCCAGAGGCAAACAATCCAGACGGGAAAACAACAGAGGAAGAAACTTCAGAGCAGGAAACTCCAGAGAAGAAAACACTAGAGCAAGAAACTCTAGAGCAAGAAATTGCAAATAATAAATCTCCAGTGTTAGCAACTTCAGAGCAGGAAGCTGTAGAGAATGAAACTCTAGAGAATGAAACTTCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGCAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTTCAGAGAAAGAAACTTCAGAGCAGGAAATTCTAGAGAATGAAACTCTAGAGAAAGAAACTTCAGAGCAGTTACTCCTGTAAAGGAATTGCAGGACAAGAAAATACATCACAGTTAACCTCAACTGTTGCACAAACACCTGCTGAAAAACAGACACCAGAACACCACAAATAATGACTGCAGTCAGTGATGAAGATGCTTAATGAAACAGTCTAACAGCCATTTGCTCCATTTGATCCCCATTATTGGAATTTATCTAATTTATTAGGGTATGAAATGAACATATTGCTTAACTTTCAGGGGTGATTAAAATGGTGTCTGATATTTGAtaaaatatagtgaatataataaaaataatataataaaaatataatagaataatacTATGGCATAATATTTAGATTAATGATTTTTCATCAGTGAAATTTTGGG
>XM_034310891.1
TCTTAATCCTAATAGTCCAACTCAAAGTGAAGTTGTTGCTCACTAATGTGACACATGCACAAAATGCAGCTAGCTGTGCTGAGCTAATCAGTAAAGCCCATCTCTGTAATCTTATGAAAGTTGTAAAAGTAGATGGCTTGTTTGGATCGCTGCTCAGCGGGAGCTCTGTGAGTACACTCTCCAGCTGTCAGCCACATGTGTACACCGGCGGCACTGAGTCCATGGGCCTCTGCTCTCTCCTGTTAGCATGGACCACCATGGAGGCTGACACAGAGGGACAAACACTCGTCTGTCTCCCAGCATATTCCAGACATTTCTGGCAACACTTCAGACTTTAATACTCACCTATACAGTGCAACCATACTTGTCTGGAAACAATTGCCTCTACATATATACAACATGGTGGACAGTCTGCTGCTTGGAGTGGAGGGAATCAAAAAAACTATCTTGTATGGAGGAACCAGTGAGATTCCCAAATTCATCACAGGATCCAAGGTGACTTTCCATTTCCGAACCATGCTGTGCAATGACGATCGCACGGTGCTGGACGACAGTAAGAAGGTCGGGGTGCCAATGGAAGTGGTGATCGGGAACATGTTCAAGCTGGATGTATGGGAGACTCTGCTCAAGTCCATGCGCATAGGAGAAGTTGCAGAGTTCTGGTGTGACATAATTCACACTGGCCTGTATCCCATGGTGGCAAAAAGTCTTCGGCGCATTGCAGAGGGAAAAGATCCAGTGGACTGGCATATCCACACCTGTGGCATGGCTAATATGTTTGCGTTTCACACGCTGGGTTACGATGACCTGGATGAGCTCCAGAAAGAACCCCAGCCTCTCATCTTTGTGCTAGAACTGCTAAAGGTTCAGCAGCCAAGTGAGTATCACAGGGAGTCGTGGGCGATGAATGATGAGGAGAGACTAAAGGCTGTTCCTGTGCTCCATGGCCAAGGGAACAAACTGTACAAACAGGGTCGCTTTGAGGAGGCCACAAACAAGTACAAGGAGGCAATCCTTTGCATCAAGAATGTTCAGTCAAAGgAAAAGGCCTGGGAGGTCCCCTGGCTAAAGCTTGAGAAAACGGCCAATACTCTCACACTCAACTACTGCCAGTGTCTGCTGCGCATGCAGGAGTATTACGAGGTCATTGAGCACaccagtgacatcatcaaccaGCATCCTGGCGTGATGAAAGCTTTCTACCTGCGGGGAAAAGCACACACAGAGGTGTGGAATGAAGCTGAGGCTAAGGCTGACTTTCAGAGGGTGCTGGATCTAGACCCAAATATGAAGAAGTCAGTGAAGAAAGAGCTAGCTGTTCTCAACATGCGTatggaggagaagagagaggaggacaGACAAAAATACAAGGGCATGTTCACAGCGACAGGAACAGGGcaaacaagtccaggacaaacACAGGAACAGGGGAATACGGACCAAGAAACAGCAGAACAATCAACTACTGACCAAGAACCTTCCAAGCAAGTGGCTCTAGAGCAAGCACCTACACAACAAGAAACATCATTGAAGGAAACTCCAGATAAAGACACTCTAGAGCAGGAAACTCCAGAGGCAAACAATCCAGACGGGAAAACAACAGAGGAAGAAACTTCAGAGCAGGAAACTCCAGAGAAGAAAACACTAGAGCAAGAAACTCTAGAGCAAGAAATTGCAAATAATAAATCTCCAGTGTTAGCAACTTCAGAGCAGGAAGCTGTAGAGAATGAAACTCCAGAGCAGGCAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTCCAGAGCAGGAAACTCTAGAGAATGAAACTTCAGAGAAAGAAACTTCAGAGCAGGAAATTCTAGAGAATGAAACTCTAGAGAAAGAAACTTCAGAGCAGTTACTCCTGTAAAGGAATTGCAGGACAAGAAAATACATCACAGTTAACCTCAACTGTTGCACAAACACCTGCTGAAAAACAGACACCAGAACACCACAAATAATGACTGCAGTCAGTGATGAAGATGCTTAATGAAACAGTCTAACAGCCATTTGCTCCATTTGATCCCCATTATTGGAATTTATCTAATTTATTAGGGTATGAAATGAACATATTGCTTAACTTTCAGGGGTGATTAAAATGGTGTCTGATATTTGAtaaaatatagtgaatataataaaaataatataataaaaatataatagaataatacTATGGCATAATATTTAGATTAATGATTTTTCATCAGTGAAATTTTGGG

Function

symbol description
aipl1 Predicted to enable peptidyl-prolyl cis-trans isomerase activity. Predicted to act upstream of or within visual perception. Predicted to be located in cytoplasm and nucleus. Is expressed in brain; photoreceptor cell; retina; and retinal rod cell. Human ortholog(s) of this gene implicated in Leber congenital amaurosis; Leber congenital amaurosis 4; blindness; and retinitis pigmentosa. Orthologous to human AIPL1 (aryl hydrocarbon receptor interacting protein like 1).

NR:

description
PREDICTED: aryl-hydrocarbon-interacting protein-like 1

GO:

id name namespace
GO:0006457 protein folding biological_process

KEGG:

id description
K17767 AIP, XAP2; AH receptor-interacting protein

RNA

RNA id representative length rna type GC content exon number start site end site
TU265559 False 164 lncRNA 0.52 2 11208397 11220656
XM_026924673.2 True 2359 mRNA 0.44 7 11188250 11193329
XM_034310890.1 False 2130 mRNA 0.44 7 11188250 11220647
XM_034310891.1 False 2284 mRNA 0.44 8 11188250 11193329

Neighbor

gene id symbol gene type direction distance location
trarg1a tusc5 coding downstream 2731 11174002 ~ 11185519 (-)
tmem199 tmem199,LOC107592604 coding downstream 120022 11064601 ~ 11068228 (-)
gemin4 gemin4 coding downstream 164920 11017152 ~ 11023330 (-)
pipox pipox coding downstream 350122 10826289 ~ 10838128 (-)
usp32 usp32,LOC108425843 coding downstream 494979 10651351 ~ 10693271 (-)
abhd15a LOC108278383 coding upstream 14984 11235640 ~ 11243992 (-)
exo5 exo5 coding upstream 53107 11273763 ~ 11279974 (-)
rflnb rflnb coding upstream 60675 11281331 ~ 11284623 (-)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 66949 11287605 ~ 11308511 (-)
mnta mnt,LOC105027537 coding upstream 98619 11319275 ~ 11336278 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding downstream 19582 11105571 ~ 11168668 (-)
G224086 NA non-coding downstream 118292 11069684 ~ 11069958 (-)
G223855 LOC108277744 non-coding downstream 426517 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 551456 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 576402 10560426 ~ 10611848 (-)
G224358 NA non-coding upstream 174064 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 202905 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 203973 11424629 ~ 11424859 (-)
G224370 NA non-coding upstream 243592 11464248 ~ 11464691 (-)
G224371 NA non-coding upstream 245297 11465953 ~ 11466243 (-)
appbp2 appbp2 other downstream 466917 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 875734 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1475191 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2241351 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2709338 8404829 ~ 8478912 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1168210 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1214550 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1700307 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1720254 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 1849480 13070136 ~ 13080860 (-)

Expression


Co-expression Network