G224374


Basic Information

Item Value
gene id G224374
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11469092 ~ 11469362 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265662
CTCCTCCCATCTCTGAGCACCTTCCCAGTTAGTCCTAAACTGAGTCCTGTTCCTCATGACATTGTTGGCAAACTTTATGCAGGTAATTCTTATTGGCGGTTAGGAGGGATAAAATAGAATCCTAGTTACTGCTAGTTAATGCTAGTATAGAACTGTAGTTCTATGAATGCTGGATAGCTGCTAGGCTTCCTTCAGAATCAGTACAGACTCGAGAGGAAGATTTCAGTGAAAGATGCTATGGACAATGGAATAAATTGCAAATATTGTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265662 True 271 lncRNA 0.41 1 11469092 11469362

Neighbor

gene id symbol gene type direction distance location
tlcd2 tlcd2,LOC103028751,LOC107585588,LOC107664963,LOC107743747,LOC107592621,LOC107744789,LOC107685052 coding downstream 8683 11442749 ~ 11460409 (-)
si:dkey-54n8.4 LOC108277674 coding downstream 28888 11426510 ~ 11440204 (-)
cluha cluh,cluha,LOC107664929 coding downstream 46306 11403246 ~ 11422786 (-)
pafah1b1a lis1a,pafah1b1,LOC108431306,LOC103047044,LOC102225619 coding downstream 66608 11374703 ~ 11402484 (-)
mettl16 mettl16,LOC107585611,LOC102789714 coding downstream 96305 11338483 ~ 11372787 (-)
hif1al LOC100304653 coding upstream 30577 11499939 ~ 11512932 (-)
mmp20b LOC108277439 coding upstream 58695 11528057 ~ 11533961 (-)
tp53i13 tp53i13 coding upstream 67273 11536635 ~ 11546641 (-)
taok1a taok1a,LOC108277908,LOC108425880,LOC107585593,LOC107743657,LOC107664926,LOC107744793,LOC107592626 coding upstream 80275 11549637 ~ 11577496 (-)
dph1 dph1,LOC107664954,LOC107685060,LOC102789142 coding upstream 257161 11726523 ~ 11817784 (-)
G224371 NA non-coding downstream 2849 11465953 ~ 11466243 (-)
G224370 NA non-coding downstream 4401 11464248 ~ 11464691 (-)
G224361 NA non-coding downstream 44233 11424629 ~ 11424859 (-)
G224360 NA non-coding downstream 45224 11423561 ~ 11423868 (-)
G224358 NA non-coding downstream 71264 11394720 ~ 11397828 (-)
G224375 NA non-coding upstream 2694 11472056 ~ 11473209 (-)
LOC113532936 NA non-coding upstream 145237 11614599 ~ 11644172 (-)
G224414 NA non-coding upstream 170797 11640159 ~ 11640359 (-)
G224415 NA non-coding upstream 173471 11642833 ~ 11643060 (-)
G224613 NA non-coding upstream 370386 11839748 ~ 11841037 (-)
aipl1 aipl1,LOC106612843 other downstream 248436 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 747759 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 1156576 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1756033 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2522193 8941018 ~ 8946899 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 919504 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 965844 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1451601 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1471548 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 1600774 13070136 ~ 13080860 (-)

Expression


Co-expression Network