G224613


Basic Information

Item Value
gene id G224613
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11839748 ~ 11841037 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU265920
GCATACTTCTCCTAAAACCCCAGAGgcagacagcaagagagaagACGTTTAAATAATGAAGTTTTTTTGGTAGAACCGTGGCCTAGAAAGTacttgagagaaagaaaatacaccTTACAATTGTCTTTTCTTTTGCCAAGTTCTGCTGTGCTTCACTTCATTCAAACACTGTGAGATGTTATTTACCTTTTTGGGGTTTAATACTGGAGGgagagaaatggaaagagagagagagatgtggtaCGAAACCAAGGGTAAGAGGGAAAATCAGAGAGAAAGTGTTTGCTAGGGGAGCTGTGGGTGATTGCGGTCATTTTGTCCAGTGGCAAGTAATCTCAAGGGTCACTACACTATCTGCAAGTCAGCTTTGGCTGAAACTTAAGTAAACAGGCCACTAATTATCCTTCTCGTCTTTTGCTCTGTGACCCTCCATAATTAGCCTATGCTCCAGAGTAATCATATTGAACACTCGCCTGCAACCCTCTCTTACTTTGCTTTTCCCAGCATGCCTCTGAATCTGGAAAAACTTTACTGAATCCCAAGAAAACTGTATCTGTGGTTCATTTCAATCCTTACTGTGCATTATCAAACGTACGAATAGAAAAAATTATTGAACATGATGTTGTTTGGATGGTCTAGCCAAACATGGGTTTGATTATCGACACTCAGGAGGTTGTGAGAGCAGAACTCTGATTGGCTTGGCAGTCCAATGGTTTCCGGACTCCTTGGTGCCTGTTAATCTCCCAATCAATCAATAGTGCGAGCAGATGTGACACAAAAACCTGTTTGTTCCATTAGAGCACTGATATAACCTAATGCCTATCCTTTCAAGCGTTCTCttgctcttgctctctttctcacttaTTCGCTCCAATAAACCCCCGTTTTAACTCTGTGCcacttttcttcttcaaaaaaaatgctaatccAGAGCTGAACATGCATATCTATGCTGTGGCACTCTGACTTTTTTTCCATTCCTCTTGTCTTTTCTGAGTGAACTTCCTGTTCATCTCCGTTGTCTCCCTAGTGAGCTGGATATAGAGACAAATGAACAGGAGGAGCAAAAGCAGCTTTTTGTGGCCCAAATGCACAGGATACTCAGGAGGGAATAGGGGGTGTAAATGAGAAGCTTTGGCATAAACTGCTTGCCTGCTTCACTCCGATGTTGTTTTGCTCCTTTAAATAATTGACACGACTGCACTACTGATGACAGGGACAAATAGACTGAAGTAATATCTCAGGCAGAGGTTGTTCTGGTATAGAATACTCTCCCACAGTGAAAAGATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU265920 True 1290 lncRNA 0.42 1 11839748 11841037

Neighbor

gene id symbol gene type direction distance location
dph1 dph1,LOC107664954,LOC107685060,LOC102789142 coding downstream 21964 11726523 ~ 11817784 (-)
taok1a taok1a,LOC108277908,LOC108425880,LOC107585593,LOC107743657,LOC107664926,LOC107744793,LOC107592626 coding downstream 262252 11549637 ~ 11577496 (-)
tp53i13 tp53i13 coding downstream 293107 11536635 ~ 11546641 (-)
mmp20b LOC108277439 coding downstream 305787 11528057 ~ 11533961 (-)
hif1al LOC100304653 coding downstream 326816 11499939 ~ 11512932 (-)
rpa1 rpa1,LOC107562955,LOC107548543 coding upstream 167398 12008435 ~ 12041025 (-)
serpinf2b LOC108277904 coding upstream 202963 12044000 ~ 12049331 (-)
wdr81 wdr81,LOC107562947 coding upstream 208865 12049902 ~ 12065211 (-)
slc47a4 LOC108278407 coding upstream 258273 12099310 ~ 12108019 (-)
pitpnm3 pitpnm3,LOC108277935,LOC108425893,LOC107685064,LOC107664939 coding upstream 272060 12113097 ~ 12174334 (-)
LOC113532936 NA non-coding downstream 195576 11614599 ~ 11644172 (-)
G224415 NA non-coding downstream 196688 11642833 ~ 11643060 (-)
G224414 NA non-coding downstream 199389 11640159 ~ 11640359 (-)
G224375 NA non-coding downstream 366539 11472056 ~ 11473209 (-)
G224374 NA non-coding downstream 370386 11469092 ~ 11469362 (-)
G224615 NA non-coding upstream 11979 11853016 ~ 11853582 (-)
G224636 NA non-coding upstream 60244 11901281 ~ 11901522 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding upstream 132345 11973382 ~ 11973834 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding upstream 132882 11973919 ~ 11976018 (-)
G224746 NA non-coding upstream 239263 12080300 ~ 12081079 (-)
aipl1 aipl1,LOC106612843 other downstream 619092 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 1118415 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 1527232 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 2126689 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2892849 8941018 ~ 8946899 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 547829 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 594169 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1079926 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1099873 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 1229099 13070136 ~ 13080860 (-)

Expression


Co-expression Network