tbx4 (tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041)


Basic Information

Item Value
gene id tbx4
gene name tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12388866 ~ 12407489 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU266317
TTTTCATCAGTTCCTCTTTAGACTTTATGTACTTTGAGCTCAATACGTTGATGTGGCCCTAAATGAGCTTTATTCTGAACCCTGTGATGTGTGTCCATACAGAATTTGACATCCCAACAATGTGTGCTGAGAGCACCAAATTATAGTTCTGATTGTGGCATTAAACTCAATCCAACATGGTACACTTAACATAACTGGACATCAGAGAGGGTCTGCACAACCAGATGGAGGCTTTAAGAGTGATCCTTAAGCCAAGAGGAGAGAAGAACAGAGATCTGTTAAGATGTCCAAGACCAAAGACCCAAAGGGCTGAGCCCTTACAAGactgaaaatgtaaaacagCAGGCAAATGGCCATAACACAAACTCAAAAAGGATGAACC
>XM_026924628.2
GGTGTTGTGGTTGCTGGAGTCAGAGGAACAGTTTGAGGGCCGCTTATAGGTGTTATTATCGAGTGCGACGTCAGCGATGAGACatgagagggagggggagagcgCGTGAGAGAGCCCTGTAATTCACCCCTACTGTCTTAACAAATCAAGCTGTTCAGCATAGTCCCCTTTGTGTATTCTCAAGAAAACTTGTGCAGTGAGCTCTGCTCAAAGCCACCAGTGCATCTGCTGCTGAGCTGAGAGGTTTCATTTCGCGGAATATCGGTGTGCTTTGGTGAACTGAGCGTTTGCGCGAGAACCGTTACATTGCCTTGACGCAGGAGATGCTGAGCAGACAGCGCGCGCACTAACCGGGACGTAACTTCCTGCCGACTCGCACCGAGGACTCGCTCCTGCTTTCTggaaggagatggaggaggaattCAGCACGTAATAGCCGAGTTAATGAGaGATGCTCCAAGAAAAAGCCTCAGCTGTGGCTGATGAAGGTGTGACTGTGGCACAGTCGGGTGAGCTTGCTGAGCTTGCTACTGACTCCTCACATCTGGGCTTACCTGTGGCCCCGAGCATCCACCACAACAATGAAGTCGACCAGAACATCGAGAACATCAAAGTAGTTCTTCATGAGAGGGAACTTTGGAAAAGGTTCCACGAAGCAGGAACAGAGATGATCATCACTAAAGCAGGCAGGCGGATGTTCCCCAGCTACAAAGTAAAAGTCACAGGGATGAATCCAAAAACAAAGTACATCCTACTAATCGACATTGTTCCAGCTGATGATCATCGTTACAAGTTCTGCGATAACAAGTGGATGGTGGCTGGAAAAGCAGAGCCGGCCATGCCCGGGCGGCTCTACGTCCACCCTGACTCTCCTGCAACAGGAGCTCACTGGATGAGGCAGCTGGTCTCGTTTCAGAAGCTAAAATTAACAAATAACCACCTGGACCCTTTTGGACATATCATCCTGAACTCTATGCATAAATACCAGCCCAGGTTGCACATCGTCAAAGCAGATGAGAACAACGCCTTTGGTTCTAAGAACACGGCCTACTGCACCCATGTGTTTCATGAGACCTCATTTATCTCTGTGACATCATATCAAAACCATAAGATTACCCAGTTAAAGATCGAGAACAATCCCTTTGCCAAAGGTTTTCGTGGTAGTGATGAAGGAGACCTTCGAGTGTCCAGACTCCAAGGGAAAGACTACCCAGTGATTTCCAAAAACATGGCACGGCAACGgctcatcacatcacacacccaTCTGGCTGGCAAGTTAAGTGCAGGGGTACTGAGTGGTCACCCGCAGGTCCACTCTCATTATCAGTATGATAGTGGGGTCGCTCTGTCCAGTTCTGACCCACAGGAGCATCTATCCAACCCATTTCCTCCTGGCAGAGAATCCAGTCTGCTTTACCATTGCTTCAAGCATAGAGAGAACAACAGGCATTTGGAGCTGGGCTGCAAGCGGCCCTACCTTGACACGGCACCCTCAGCTGTTTCAGAGGAGCACTACTTCCGCTCCCCTTCTTCCTACGAGCCCTCTTTACTGTCTCACCCCTACTGTGGTGAAGCATTGGGCTCTAGAGAGGCCTGTATGTATGGAGGTATGGATGGTGAGGCAGGAGCTGTAGGTGTAGCTAATACTGAGGACATGCCTCCACCCTCCCTGAACTGCAACATGTGGGCATCAGTCCAGCCCTATCCTCGATATGGTATGCAGACTGTTGAAGCTGTACCCTACCAGTCCTTCAGTGCTCACTTAACAAGCACAGCCACCACTGCATCCATTGTCTCTCATCACTCAGCATCTATGCAACGACCACAGCCTGCACCTCAGGTTCCAGACCTGGTGTCTTTTGGTACACAGCGGGCTTTGCCACCAGTACcgtcttcctcttcctcctcttcctcgtcCCCTTCTGGTGCTTCCTCATGTGACAGATCAGCCCATCTGCCGCTGTACCACAGGAAGCCTGGGTCACCTCTGAGAGTCCACAGGGATTTCTCAGCCTACCCAACCCAAAGCCATGCATCATCGAGAGAGCCGGTGTACCAGTATCAGATGGGCCTCAACAGCATAGGGTCCCACTGGACTGACAGCTAAGACAAGAGGCATAATACCACTGTATTGTTTAGTCTGATGTTTGTGTCACCTTAGAGTCACACACTGCCTCTAAGAACCCCAAagagattatttttctatacagCCATATTTCCAAATTGCCAAGTTAATATGCAAGTATCATACTGATATAGTAAGTGCAGAATTTGTAAATATACACcactgttcaaaagtttggagACACCAGtcatactttattttaaaatcattatttcattcCCCATAAACTCATACAATCTAGCTCTAAATAATATAATCTAGACAATAAGATGGTCTGcttcatttttaaagtatttggggaaaaaacattattattaaatgattagtaATATACagaaattatactgtatatgtgtaacAGTTTCTCCATAAAGCCTGCCTTTGGATTTGATCTCCATTGTTCAAATATATGGCATTctggattttaattttgttataatATATATCGATGCCATACAGTTGTAGATTATGCTGATACATCAGTAAATGATCATATCTTGGTTTACAGCTTGTGGCAAATGATTTGAAACCTATGAAGGTGCATATGGCTAGCTTCACTTTACAGTAACATTATCTACAGTATATGGACCTAcaacaaaatggattttatattatttaaaatactgaGTTAAAACTTTGAGTGGTAAATCCACACTTTTGAAGAGTAATGTATAGAACGCATAAAGCATTAATTTGCTCTAtcaatgtcatatttatttgtgtatggTGTATGTTTATAGTTGTGCTTGCAATTACATTGGATGTAACCATGCATAAGCACTGCACTGAATGCACCAAGAGACCATTAACTATAGCTTAAGGATGTTCAAAATGTTTCAGTGCCAATGGTGTGTTAAAGCACAAAATGTCTCTACTATATGATAGTAGTCAGTATAATGAAGGAGACATTGAGGTTAATGAATTGAACAATTTGAGGtttaacaatacatttttgGATAGTTTAGCACAAAATCAGTTCCACATTGAGTGGGGTATCAGTTTTTTTGCTTAGATAACTAGCTAAGATGCTGTTCAGAATCCAGCCCTAATTACACTGAGCAAAATATGAGGAAAAATACCTTCTAGTGAATATAGTTCACAACAGTCAATTTACCCATAAATTCTGAAGATACTGGATGGGATATGATCTTTAACCCATTAAGGCCAACATTTTGTTGGAAATTAAATAGTTCCACATAATTTGGAAATTTATGTACTGTGGTCTGTTGATAACTACTAGAAAtcactatataaaaatatgttgtgGGCTATATTTCACAGCACTATCGAGTTCAGAGGCTGTAGCACAATTCAAAAGTTTTCATCAGTTCCTCTTTAGACTTTATGTACTTTGAGCTCAATACGTTGATGTGGCCCTAAATGAGCTTTATTCTGAACCCTGTGATGTGTGTCCATACAGAATTTGACATCCCAACAATGTGTGCTGAGAGCACCAAATTATAGTTCTGATTGTGGCATTAAACTCAATCCAACATGGTACACTTAACATAACTGGACATCAGAGAGGGTCTGCACAACCAGATGGAGGCTTTAAGAGTGATCCTTAAGCCAAGAGGAGAGAAGAACAGAGATCTGTTAAGATGTCCAAGACCAAAGACCCAAAGGGCTGAGCCCTTACAAGactgaaaatgtaaaacagCAGGCAAATGGCCATAACACAAACTCAAAAAGGATGAACCAGACATTGGTAAGCCTGCTCACTGctcattaagaaaaaaaaaggatgtatcTGAAAACCATATGTTGGTCTGGTGACCTGCATGATCCAATTTGCTTTGGCTTCAACATGTAACAAAACCCATAATGATTTTAGTTTTTTGCACACCTGTTGAATAAATGGTACTCTTTTTGTCTCATAGTCAGTGTCTAAAATGGGCCTGTATTAGACACATGTTTAAACCAAAGGTAATCCAATCATTGTGCTCACTGAATTAAAACAGTGGTACATTTTAAACTGTCGACATTTCAAAGCAAACTACCATGAATGGTTACACTTTGAGATAGGAGACCACACTGTACTTCCTGCAGTGTTCGGTAGCTTTCAGTACATTTTCCCCCTTGTAGC
>XM_026924629.2
TGCAGAAATCCCCACCAAAGGCACCCAGAGGTTTTGTACCCGATTCAACCCAAAGaGATGCTCCAAGAAAAAGCCTCAGCTGTGGCTGATGAAGGTGTGACTGTGGCACAGTCGGGTGAGCTTGCTGAGCTTGCTACTGACTCCTCACATCTGGGCTTACCTGTGGCCCCGAGCATCCACCACAACAATGAAGTCGACCAGAACATCGAGAACATCAAAGTAGTTCTTCATGAGAGGGAACTTTGGAAAAGGTTCCACGAAGCAGGAACAGAGATGATCATCACTAAAGCAGGCAGGCGGATGTTCCCCAGCTACAAAGTAAAAGTCACAGGGATGAATCCAAAAACAAAGTACATCCTACTAATCGACATTGTTCCAGCTGATGATCATCGTTACAAGTTCTGCGATAACAAGTGGATGGTGGCTGGAAAAGCAGAGCCGGCCATGCCCGGGCGGCTCTACGTCCACCCTGACTCTCCTGCAACAGGAGCTCACTGGATGAGGCAGCTGGTCTCGTTTCAGAAGCTAAAATTAACAAATAACCACCTGGACCCTTTTGGACATATCATCCTGAACTCTATGCATAAATACCAGCCCAGGTTGCACATCGTCAAAGCAGATGAGAACAACGCCTTTGGTTCTAAGAACACGGCCTACTGCACCCATGTGTTTCATGAGACCTCATTTATCTCTGTGACATCATATCAAAACCATAAGATTACCCAGTTAAAGATCGAGAACAATCCCTTTGCCAAAGGTTTTCGTGGTAGTGATGAAGGAGACCTTCGAGTGTCCAGACTCCAAGGGAAAGACTACCCAGTGATTTCCAAAAACATGGCACGGCAACGgctcatcacatcacacacccaTCTGGCTGGCAAGTTAAGTGCAGGGGTACTGAGTGGTCACCCGCAGGTCCACTCTCATTATCAGTATGATAGTGGGGTCGCTCTGTCCAGTTCTGACCCACAGGAGCATCTATCCAACCCATTTCCTCCTGGCAGAGAATCCAGTCTGCTTTACCATTGCTTCAAGCATAGAGAGAACAACAGGCATTTGGAGCTGGGCTGCAAGCGGCCCTACCTTGACACGGCACCCTCAGCTGTTTCAGAGGAGCACTACTTCCGCTCCCCTTCTTCCTACGAGCCCTCTTTACTGTCTCACCCCTACTGTGGTGAAGCATTGGGCTCTAGAGAGGCCTGTATGTATGGAGGTATGGATGGTGAGGCAGGAGCTGTAGGTGTAGCTAATACTGAGGACATGCCTCCACCCTCCCTGAACTGCAACATGTGGGCATCAGTCCAGCCCTATCCTCGATATGGTATGCAGACTGTTGAAGCTGTACCCTACCAGTCCTTCAGTGCTCACTTAACAAGCACAGCCACCACTGCATCCATTGTCTCTCATCACTCAGCATCTATGCAACGACCACAGCCTGCACCTCAGGTTCCAGACCTGGTGTCTTTTGGTACACAGCGGGCTTTGCCACCAGTACcgtcttcctcttcctcctcttcctcgtcCCCTTCTGGTGCTTCCTCATGTGACAGATCAGCCCATCTGCCGCTGTACCACAGGAAGCCTGGGTCACCTCTGAGAGTCCACAGGGATTTCTCAGCCTACCCAACCCAAAGCCATGCATCATCGAGAGAGCCGGTGTACCAGTATCAGATGGGCCTCAACAGCATAGGGTCCCACTGGACTGACAGCTAAGACAAGAGGCATAATACCACTGTATTGTTTAGTCTGATGTTTGTGTCACCTTAGAGTCACACACTGCCTCTAAGAACCCCAAagagattatttttctatacagCCATATTTCCAAATTGCCAAGTTAATATGCAAGTATCATACTGATATAGTAAGTGCAGAATTTGTAAATATACACcactgttcaaaagtttggagACACCAGtcatactttattttaaaatcattatttcattcCCCATAAACTCATACAATCTAGCTCTAAATAATATAATCTAGACAATAAGATGGTCTGcttcatttttaaagtatttggggaaaaaacattattattaaatgattagtaATATACagaaattatactgtatatgtgtaacAGTTTCTCCATAAAGCCTGCCTTTGGATTTGATCTCCATTGTTCAAATATATGGCATTctggattttaattttgttataatATATATCGATGCCATACAGTTGTAGATTATGCTGATACATCAGTAAATGATCATATCTTGGTTTACAGCTTGTGGCAAATGATTTGAAACCTATGAAGGTGCATATGGCTAGCTTCACTTTACAGTAACATTATCTACAGTATATGGACCTAcaacaaaatggattttatattatttaaaatactgaGTTAAAACTTTGAGTGGTAAATCCACACTTTTGAAGAGTAATGTATAGAACGCATAAAGCATTAATTTGCTCTAtcaatgtcatatttatttgtgtatggTGTATGTTTATAGTTGTGCTTGCAATTACATTGGATGTAACCATGCATAAGCACTGCACTGAATGCACCAAGAGACCATTAACTATAGCTTAAGGATGTTCAAAATGTTTCAGTGCCAATGGTGTGTTAAAGCACAAAATGTCTCTACTATATGATAGTAGTCAGTATAATGAAGGAGACATTGAGGTTAATGAATTGAACAATTTGAGGtttaacaatacatttttgGATAGTTTAGCACAAAATCAGTTCCACATTGAGTGGGGTATCAGTTTTTTTGCTTAGATAACTAGCTAAGATGCTGTTCAGAATCCAGCCCTAATTACACTGAGCAAAATATGAGGAAAAATACCTTCTAGTGAATATAGTTCACAACAGTCAATTTACCCATAAATTCTGAAGATACTGGATGGGATATGATCTTTAACCCATTAAGGCCAACATTTTGTTGGAAATTAAATAGTTCCACATAATTTGGAAATTTATGTACTGTGGTCTGTTGATAACTACTAGAAAtcactatataaaaatatgttgtgGGCTATATTTCACAGCACTATCGAGTTCAGAGGCTGTAGCACAATTCAAAAGTTTTCATCAGTTCCTCTTTAGACTTTATGTACTTTGAGCTCAATACGTTGATGTGGCCCTAAATGAGCTTTATTCTGAACCCTGTGATGTGTGTCCATACAGAATTTGACATCCCAACAATGTGTGCTGAGAGCACCAAATTATAGTTCTGATTGTGGCATTAAACTCAATCCAACATGGTACACTTAACATAACTGGACATCAGAGAGGGTCTGCACAACCAGATGGAGGCTTTAAGAGTGATCCTTAAGCCAAGAGGAGAGAAGAACAGAGATCTGTTAAGATGTCCAAGACCAAAGACCCAAAGGGCTGAGCCCTTACAAGactgaaaatgtaaaacagCAGGCAAATGGCCATAACACAAACTCAAAAAGGATGAACCAGACATTGGTAAGCCTGCTCACTGctcattaagaaaaaaaaaggatgtatcTGAAAACCATATGTTGGTCTGGTGACCTGCATGATCCAATTTGCTTTGGCTTCAACATGTAACAAAACCCATAATGATTTTAGTTTTTTGCACACCTGTTGAATAAATGGTACTCTTTTTGTCTCATAGTCAGTGTCTAAAATGGGCCTGTATTAGACACATGTTTAAACCAAAGGTAATCCAATCATTGTGCTCACTGAATTAAAACAGTGGTACATTTTAAACTGTCGACATTTCAAAGCAAACTACCATGAATGGTTACACTTTGAGATAGGAGACCACACTGTACTTCCTGCAGTGTTCGGTAGCTTTCAGTACATTTTCCCCCTTGTAGC

Function

symbol description
tbx4 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within embryonic hindlimb morphogenesis and embryonic pelvic fin morphogenesis. Predicted to be located in nucleus. Is expressed in diencephalon; mesoderm pelvic fin bud; pelvic fin bud; presumptive neural retina; and retina. Human ortholog(s) of this gene implicated in ischiocoxopodopatellar syndrome. Orthologous to human TBX4 (T-box transcription factor 4).

NR:

description
PREDICTED: T-box transcription factor TBX4

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K10178 TBX4; T-box protein 4

RNA

RNA id representative length rna type GC content exon number start site end site
TU266317 False 382 lncRNA 0.41 1 12389252 12389633
XM_026924628.2 True 4211 mRNA 0.43 9 12388866 12405259
XM_026924629.2 False 3817 mRNA 0.42 9 12388866 12407489

Neighbor

gene id symbol gene type direction distance location
ccdc9 ccdc9 coding downstream 80604 12293635 ~ 12308262 (-)
kiaa0753 kiaa0753 coding downstream 102288 12267312 ~ 12286578 (-)
LOC113533058 LOC108277933 coding downstream 123485 12204303 ~ 12265381 (-)
pitpnm3 pitpnm3,LOC108277935,LOC108425893,LOC107685064,LOC107664939 coding downstream 214532 12113097 ~ 12174334 (-)
slc47a4 LOC108278407 coding downstream 280847 12099310 ~ 12108019 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding upstream 11875 12419364 ~ 12427208 (-)
msi2b msi2b,LOC108277875,LOC108425902,LOC108435815,LOC107682662,LOC108276910,LOC107587484 coding upstream 271918 12679407 ~ 12910854 (-)
LOC113532897 LOC108278265 coding upstream 601950 13009439 ~ 13013119 (-)
LOC113532896 leg9 coding upstream 609568 13017057 ~ 13023215 (-)
ksr1b LOC108277690,LOC108435810,LOC106603285 coding upstream 618389 13025878 ~ 13061751 (-)
G224970 NA non-coding downstream 26773 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 307787 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 412848 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 415032 11973382 ~ 11973834 (-)
G224636 NA non-coding downstream 487344 11901281 ~ 11901522 (-)
G225291 NA non-coding upstream 299207 12706696 ~ 12707375 (-)
G225410 NA non-coding upstream 661297 13068786 ~ 13175992 (-)
G225619 NA non-coding upstream 951321 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 956914 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 1061788 13469277 ~ 13470023 (-)
aipl1 aipl1,LOC106612843 other downstream 1168210 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 1667533 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 2076350 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 2675807 9677259 ~ 9713059 (-)
G222809 oaf other downstream 3441967 8941018 ~ 8946899 (-)
bcas3 bcas3,LOC107743646 other upstream 27717 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 513474 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 533421 12940910 ~ 13007559 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 662647 13070136 ~ 13080860 (-)
G225622 NA other upstream 960274 13367763 ~ 13368850 (-)

Expression


Co-expression Network