akap1b (akap1b,akap1,LOC108278245)


Basic Information

Item Value
gene id akap1b
gene name akap1b,akap1,LOC108278245
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 12920963 ~ 12999031 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU266669
CTTTTTATGTGCTTACTGTGATGTTAAAAAGTCTTAAGAGAGTCCTTCTTACTTACTCACTTCTTTAGTTCTGTCTCAGTTCCATCAGTTTAATTTGCTGTCTTCTGACATTTATTGTCttggaaagtttttttgttttttttcttTGTAAGTTCATAATTACCCAGTAGATTTCTGACCATTTGTTCTTTTATCAGTGCTCGAAGTTCATGGCCTTCTCTTCTCAACCTTTTCCAATGCCATGCTTCATCTATCCATCATACTTCACTTGTCCATgtctgtgtaaataaaatttcactGTTCTTTTGTACTGGGAAAAGTGTATGAAAACAAAgggatcatgtttttttttttttcttccacccCAACCACATGTTCTGTTTATAGGACTGGTTTGAAGTGTTTTGCTTAGCTAGTTGATTAATTCTTTGATTATTTGAGTGCAAAGCAATCCTGCCCACAGCATAACCATGTACAGGTCAGTTTTTGCTAGACTCAGAAAAGGTTTGAATCTCGGTTGTAcagatctatatatatataaatatatataaaagagaataaaatt
>XM_026924551.2
CGCGAGATCTTACCGAGTCGCAGGGAAAAGCGCGGTTATCGCGAGATTTGAACAGCTGATCCGGCTCTGTTTAGCGTGCTTTCGGTCGGTCAACACGtggggaggagagaaagagccAGAGACAGCAGCAGGGACGCGTTTGGATGGTGTTGGGCCCGGAGTAGCGGATTAGTAACCGagcttcatcacttcatcacggCTGTGCGCTTCACAGTGGAGGCGGGAAGGACACACAAACACGGAGCAGTACTTAGGATCCACAGGAGATGCCACTCAGGTTTCGGTCCTTTGTCCCGTACACACTTCCTGGAGTGCTTGCACTCATAGGCTGGTGGTGGTACATTTCTCGCAAGAAAGCACGGATCACCAGCCATGACAGTGAGGAGGAACCGGTTGCGGGCCTGCTGGCTTCACCTGCTAAGGGCACTAATGGAATGGTGGAAACCACACACAGCAGACCCTGCTTAGACAAACCCAGTGCCAAAGAACTGGTGTCTGCTGAGCAAGAGGTTGTAGCACGGATACACACAATGGCAACAAGCACCTCAGTAGAAGAACCAGTCAGCTCCCCAGTGGTAGTGGAAAAGCTGGGTACTCCTCCTCCATGCAGCACTGCAACTACAGACTCCCAACAGAGCAGCCTTGAAGTGGTCAGGGAAAAGTCCCCAATCTTAGCCTCAACTCCATCAAACGATGTTGAGGAGAGTCCTCCATGTGAGATACAAGAGGCAGTTGTTCTAAGCAATGAATCAAGCCAGTTGCCTGCTGAAGCAGAGCTGGACACTTCTGGCTCACTCGGGCAGTCTTGGGATCAAACACTCGACAAACGGCAGACTGACGCAAACGAAATGGCTCCACTTATATGCCAGGTTGTGGAGTTGTCCAAAGCGGAGCGCCCAGAGCCTGAAGGAGAGGTGGCTGATGATGTATTGGCTGTGCCATTTGCTGAGAACCTCCAAGCAGACTTGGCAAAAGACGGTCTATCCTCCACCAAAGATGACTTGACTCTCAATTCACCAGCGACTGGGGATCAGTACACTCAATCTGCATCACAACAGTTACTTGGTCTTGACAGTCCTATACTTCCTGCCTCATTTCCAGTTTCCACCAGCTCCCCCGTCTTAAACGATTTTATACAAGTCCAGAACCACGAGAACGGAGACCTGAGCCATGCAGTTGAGAGCAGCGACAGCACGGAGAAGCTGCAACGCCTTGCAGCCGGCCTCATCACTGAGGTCATTTCCGCAGCTGCCCAGGAGGTCATGGCAGTCAGCAGCACCACGTCTCAGCTCAGCGAGGGTCCGGAGGATGCTCACAGCATGGCAGTGAGCAGCTGCGTGTCTCAGCTCAGCGAGGGTCCAGACGATGCTCACAGCATCACGTCTAATTTAAACGGAAAGGAAATTGTCAGGGAAGAAGACGAGTGTGTGGCTCAGGTGGGTTCCTCTTCTGAAGACTACAAAGATCACGTAGAGCAGCATGCAGCACAGATTGCCAAGGAGGTCATCAATGGCTGCCTCACTCCCTCTATATGGGAGAAGTCCGAGACACAGGACAGTTTTGCTCTCAGTGACCATCAGGGACAGTTAGAATCGACTCAGATCCTGCCCACGGTTCAGGCGAAAGAGGAGGCTGTGATGGGAACAGAGGATTCTGGGTGTAGCACTTGCCAGTCAGAGGATGGCATCAGCAACGAAGACCTTGTCATCAGCACAGATTTGTCATCAGCAGTGCATGACAGCAAAGAGGACCTTATTCAGATTTCAGGGATCTCGACTTCAGAGGAAAAAGGTGATGGACATCAGGAAAGCTCTGATTCAGCAGTCCTAGAGGAGACTGTGCTGAGCGGGGAGCAGGCAGCACCTACCTGTGTGCTAGCACAGGTGAATGGGGAAGCTCTCAGGAATGGAACCAGTGAAGCAGAGGCTGATCAGTCTGGAGGTTCGGATGTGAACAGTATGGATTCAGTAGACAGCTGCTCCGCTTTGGGGACAGGAAATGGTCAGCAGAGTGGCAGCCAGGCCAGTCAAACACAGAGCTCCGAGCTGATTGTGTGGGAAATAGAGGTGCCAAAGCATCTAGTTGGTAGATTAATTGGAAAACAAGGAAGGTATGTGAGCTTTCTGAAGCAGAGCTCTGGTGCAAAGATCTACATCTCAACTCTGCCTTACACTCAAGAGTTTCAGATCTGCCATATAGAAGGTACCCAGCAGCAGGTAGATAAAGCATTGGCCTTGATTGGTAAGAAGTTTAAAGACCTGGACCTGACCAACCTGTATGCTCCTCCATCGTTGCCTCTCTCCCTGCCCTCCCTGCCCATGACTTCCTGGCTCCTGCTTCCTAACGGCGTAACAGTGGAGGTGATAGTGGTGAACATCGTCTCTGCGGGCCACGTGTTTGTCCAGCAGCACACGCACCCTACGTACCACGCTCTGCGCAGTCTGGACCAGCAGATGTTCCTGTGTTACTCTCAGCCTGGCACTCCTGCCCTGCCCTCACCTGCTGAAATTGGTGTGATCTGTGCGGCTCCTGcagtggagggagcgtggtggcgagCGCAGGTCATCTCCTTCTATAAGGATTCCAACGAAGTGGAGATCCGATACGTGGACTACGGCGGCTACGACCGAGTGAAGATTGATACTCTTCGTCAGATTAGGTCTGACTTTGTGACGTTACCGTTCCAAGGGACAGAAGTGTTATTGGACAACATCGCTCCTCTTCCTGGAGAGGATGGCTTTTCAGCTGAAGCCAACTCTGCCCTGGAAGAGATGACACGAGGGCTACCTTTGCTTGCACAGgtCACAAATTACGACAATAACACAGGCCTTCCGTTAGTACAAATGTGGAACATGGTTGGAGACGAGCTGGTTCTGCTGAATCGTACATTAGCAGAGCGAGGTTTAGCTACGTGGGTGGACAGTTTCTGATCCCTTGCCTCCTGTTCTTCTCTCACCCTCCATCCCTTCCTTCACTTTTTAGACCCCGCCTACCTGAAGTGCACATCACTGGCTAGCAGAAAAttacttttacatttgttttttaaggTTTTGCTTTCTACTCCCTTTCAAACTAAATTAATGTACTGTACAGGGGGACAAATATTGAAAATGGAGATAGCCAAGTTTTGATCAGAGAAAACTTGTACAAGGAAAAACTGACAGAAGAAATCTCTTCATTGGTGTAAATTTAAAGAAATCTAGTAACTAAATCAAGTTGATCATGTTTTCCGTCCAACGAGGCTCCTTCGGCACAAATCAGACTGTGGATTTAAGAGCtgtaattgtatttaaaaaaaaaaagaaaaagaaaaaaaaagtgtacattaAAATTGTAACAATGGTGCAGTTTGTAAAGACTGTTGATGCTCGGGTTTGGGACTGTTTTCAGCAACTTGTGCATACTTTTGTAGCTGTATCTCACTAATTAATATTGGATTTATTTCCTAGTTCACTACTGCAAGTTCCTTTGAGGTTGAGGCCCAAAGTCCCCAACACCTGTGCACATTTAGTGTATAGAACAGGACTCATCCATGTCATGAAGAAACACACTGTGCAAAGGTGTGTGATCCTCTTTCACAGAGTCTTGTTCATCAATGTGGCCTTACGGAGGGAAACAAAATCCTGCCCTCCGCTGCGCACAGTCTGTGGGACGTGTCCTGCAAATTGCCTTCAGTGTGAACATCTCCATATGCAGCTTACTTCTCTGTTGCTCTTATTTAAGAGTCCATTATTCAAGATTTTCTCATGTATCTCGAGGAATACACTAAAGCACTGACCAGCGCTTCACTTGAACATGGCTTCACTACACGTTTATCCTGACCTGTGATGAAACGTTCACATCAGAGCACTGAGGTGTATCAGAGCTCAGGCTCCTGTTTTGGGTAGATGAACTGCATGTAGTGTGCTGTGTCAATTGTATGCATGCAGTCCTGTTCAGAGCACATCTTTGATCCACACGTAACATAAACCCACATTTCACTATCTAGCGTGGCTTTGCGTAAACACCAGAGGAGGGTTGATCACTTGTCTGTAGTCTACTGTGCCCACAGTCAGGTTCCTTGGATCAAAACGGTCATCATGGTCAGTAGCTAATGTCTGTAGTCTGAAATGTTTAGAATGTCCACCGTCTCATTATGCTGGCTGCTAAAATAAGCACTCTGGTAATACTGGTTTGTTGCAAAAGATAAAAAGCTTTAAGAAGTctcattcaggttttttttttttttttcctttagttgGGTTTGACCTAAGAAATGCTCTGTTGCCGTACAGGTATTTTGTTAAAAAGAGTGTAAACcactggggattttttttttttttttaattattattattatttgtgtgcgtgtgtgtgtgtgtgtgtgtgtcattgagTATGTTGCATTCAGGGCTCACTCATCCAGTTTTCTGCTGCTATACCACTTCCATCCTAATGTTGCCAATTCCTAACCTGATAGAATTTCACCAGCTGTTTTCATTTGgtctgtttgttcatttctttttttccccgaGCACTAATTTCCCTTTGTGATTTCCTCCTATGCGGTtatgtgtgtgctgctgttgtaTTTGATGAAGACTATATCTGTCTGGTTTCAGCCTAACTTCAAAAACTTGAATTGTTTTTCCCTTGAATTTTGTTTGTTGATCTAAAAAGATGGTGATTATTGTGTGAACCCAACAGCCTTGTAAACTGTTAAAGAAGGATATGTTTCTGTAGACTGCAAAAGGATGTGCACTTTTCTGTAACCTCACTCTCTCTGAAATGCTATACGATCTGTAATATCTGTGGATttggctttatttttttcctgtctggTGCTCAGGTTGTTGGGTGTATTGTCTGAagctgtggggaaaaaattaacACACTAGGCTATGATGTACTAAATGTACTATAGAATGTAGTCTGTTAAGGTATTTCTACATTATACAGTCAAACAAATAAGGCAGCACAGCAACTTAAATGCAggaactgtttgtttttttgtttttttttttctccccctcttTGTAAGTTCATAATTACCCAGTAGATTTCTGACCATTTGTTCTTTTATCAGTGCTCGAAGTTCATGGCCTTCTCTTCTCAACCTTTTCCAATGCCATGCTTCATCTATCCATCATACTTCACTTGTCCATgtctgtgtaaataaaatttcactGTTCTTTTGTACTGGGAAAAGTGTATGAAAACAAAgggatcatgtttttttttttttcttccacccCAACCACATGTTCTGTTTATAGGACTGGTTTGAAGTGTTTTGCTTAGCTAGTTGATTAATTCTTTGATTATTTGAGTGCAAAGCAATCCTGCCCACAGCATAACCATGTACAGGTCAGTTTTTGCTAGACTCAGAAAAGGTTTGAATCTCGGTTGTAcagatctatatatatataaatatatataaaagagaataaaattattaaaacatg

Function

symbol description
akap1b Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including alar plate midbrain region; digestive system; midbrain; musculature system; and segmental plate. Orthologous to human AKAP1 (A-kinase anchoring protein 1).
akap1 Enables protein kinase A regulatory subunit binding activity. Involved in antiviral innate immune response. Located in mitochondrion.

NR:

description
A-kinase anchor protein 1, mitochondrial-like

GO: NA

KEGG:

id description
K16518 AKAP1; A-kinase anchor protein 1, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
TU266669 False 565 lncRNA 0.33 2 12920974 12999031
XM_026924551.2 True 5444 mRNA 0.46 11 12920963 12938519

Neighbor

gene id symbol gene type direction distance location
msi2b msi2b,LOC108277875,LOC108425902,LOC108435815,LOC107682662,LOC108276910,LOC107587484 coding downstream 10109 12679407 ~ 12910854 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding downstream 493755 12419364 ~ 12427208 (-)
ccdc9 ccdc9 coding downstream 612701 12293635 ~ 12308262 (-)
kiaa0753 kiaa0753 coding downstream 634385 12267312 ~ 12286578 (-)
LOC113533058 LOC108277933 coding downstream 655582 12204303 ~ 12265381 (-)
LOC113532897 LOC108278265 coding upstream 10408 13009439 ~ 13013119 (-)
LOC113532896 leg9 coding upstream 18026 13017057 ~ 13023215 (-)
ksr1b LOC108277690,LOC108435810,LOC106603285 coding upstream 26847 13025878 ~ 13061751 (-)
cuedc1b cuedc1,LOC107587359,LOC107672109,LOC107746650,LOC107682807 coding upstream 83068 13082099 ~ 13106758 (-)
vezf1b vezf1b,LOC108278304,LOC108425912,LOC107756309,LOC107682824 coding upstream 113869 13112900 ~ 13125942 (-)
G225291 NA non-coding downstream 213588 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 558870 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 839884 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 944945 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 947129 11973382 ~ 11973834 (-)
G225410 NA non-coding upstream 69755 13068786 ~ 13175992 (-)
G225619 NA non-coding upstream 359779 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 365372 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 470246 13469277 ~ 13470023 (-)
LOC117599099 NA non-coding upstream 659934 13658965 ~ 13728334 (-)
bcas3 bcas3,LOC107743646 other downstream 282238 12435206 ~ 12638725 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other downstream 513474 12388866 ~ 12407489 (-)
aipl1 aipl1,LOC106612843 other downstream 1700307 11188250 ~ 11220656 (-)
appbp2 appbp2 other downstream 2199630 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 2608447 10308050 ~ 10312516 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other upstream 71105 13070136 ~ 13080860 (-)
G225622 NA other upstream 368732 13367763 ~ 13368850 (-)
or121-1 LOC108277640,LOC108413776 other upstream 941891 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 1025214 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1488462 14487493 ~ 14536836 (-)

Expression


Co-expression Network