G225410


Basic Information

Item Value
gene id G225410
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13068786 ~ 13175992 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU266798
TttcctgtatttattattatatatatatatttttattagtCCTTGTTGGCTGTCAAAGAGCACACTTAAAATGTCACCACCCCAAGTTTGTTGGGCTTCTGCTATCCGAGTAGATCTACCTCGTAGATTAGCTCGAGTAACTTGAGAAGAATGCTCAGTATTTCCATGCAGTTAAACAGTGGTGTAACTCTTGGCCATAATGTATAATCTTGCCTGTTCTAGCTGATGATAGCTGATACCAGTGAGAGGTATGTGCTCAGTATATGAGGAATGGTTGTATTTTAGACAGTTTGTCACTTTTTCTATCTATGTGCAGACAAAGAATCTTAGCAATAAACTTTATTTGTTGTAACCATTGGAGCCAATGCCAAAGATCCCCTAGGGttctttattgtatttttggcactcagtattattattattattattattattattattattattattatttgctctCTCCTCATCTATTTCTGGCTAAAACTTGAAAATTGTGTATACGCTTGCCTGTTTTTGTGCTTAAGCCTTCTGTTGAGAGCTAGTTTCTTGTTCTGTGTGTATGGGATAACTGCTTCAGAGCACTCTGATAAATCATTTGTCTTGTCAGCTGTGATTGCATGAAGTAGCACACATTTCTAATACATTGTTTTCTGTTCTACATTACAAGCATTTCCACCATGATGTTGTATACAATAAAAGCAACTGGAGTAGTTAAGAATGTaaatttttggttttgtatgatattttttgtgttttgtagttGAAATAAAGGCTTGTTTCCAAAT
>TU266799
ATAGCTCAGAAAAGCGTACTGTAACATATTTTATCATGATGTTGGTGTTATATTGACATATCGCTCAGCCAAACCGGATGCTAATCGCGCTGACATTATTCTATTCCTGTTAAATAATAGTGAGTGTCATAAGAGCTTTTGATCattgtgtaataaaaaaagcagCTAAGTCTTCCTAAACATGAAATGAATACAGTATACCTCGTGATCCTAGTGCAACTGCTCAGTGgctctatacatatatatatatatatatctttaattagtCCTTGTTGGCTGTCAAAGAGCACACTTAAAATGTCACCACCCCAAGTTTGTTGGGCTTCTGCTATCCGAGTAGATCTACCTCGTAGATTAGCTCGAGTAACTTGAGAAGAATGCTCAGTATTTCCATGCAGTTAAACAGTGGTGTAACTCTTGGCCATAATGTATAATCTTGCCTGTTCTAGCTGATGATAGCTGATACCAGTGAGAGGTATGTGCTCAGTATATGAGGAATGGTTGTATTTTAGACAGTTTGTCACTTTTTCTATCTATGTGCAGACAAAGAATCTTAGCAATAAACTTTATTTGTTGTAACCATTGGAGCCAATGCCAAAGATCCCCTAGGGttctttattgtatttttggcactcagtattattattattattattattattattattattattattatttgctctCTCCTCATCTATTTCTGGCTAAAACTTGAAAATTGTGTATACGCTTGCCTGTTTTTGTGCTTAAGCCTTCTGTTGAGAGCTAGTTTCTTGTTCTGTGTGTATGGGATAACTGCTTCAGAGCACTCTGATAAATCATTTGTCTTGTCAGCTGTGATTGCATGAAGTAGCACACATTTCTAATACATTGTTTTCTGTTCTACATTACAAGCATTTCCACCATGATGTTGTATACAATAAAAGCAACTGGAGTAGTTAAGAATGTaaatttttggttttgtatgatattttttgtgttttgtagttGAAATAAAGGCTTGTTTCCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU266798 False 785 lncRNA 0.34 2 13068786 13162208
TU266799 True 1012 lncRNA 0.35 2 13068786 13175992

Neighbor

gene id symbol gene type direction distance location
ksr1b LOC108277690,LOC108435810,LOC106603285 coding downstream 7035 13025878 ~ 13061751 (-)
LOC113532896 leg9 coding downstream 45571 13017057 ~ 13023215 (-)
LOC113532897 LOC108278265 coding downstream 55667 13009439 ~ 13013119 (-)
msi2b msi2b,LOC108277875,LOC108425902,LOC108435815,LOC107682662,LOC108276910,LOC107587484 coding downstream 157932 12679407 ~ 12910854 (-)
tbx2b tbx2,tbx2b,LOC107664937,LOC107685069 coding downstream 641578 12419364 ~ 12427208 (-)
si:ch211-137a8.4 LOC108278193 coding upstream 11930 13187922 ~ 13193886 (-)
si:ch211-137a8.2 LOC108278273 coding upstream 23496 13199488 ~ 13220375 (-)
clip3 clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746 coding upstream 51568 13227560 ~ 13245062 (-)
gipr LOC108278000 coding upstream 95965 13271957 ~ 13293826 (-)
nova2 nova2,LOC108277822,LOC108440380,LOC103039352,LOC107669728,LOC107589717,LOC107756760,LOC104927796,LOC100701682,LOC107379798 coding upstream 203666 13379658 ~ 13426867 (-)
G225291 NA non-coding downstream 361411 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 706693 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 987707 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 1092768 11973919 ~ 11976018 (-)
G224700 rtn4rl1,rtn4rl1b,LOC107744797,LOC107664898 non-coding downstream 1094952 11973382 ~ 11973834 (-)
G225619 NA non-coding upstream 182818 13358810 ~ 13359021 (-)
G225621 NA non-coding upstream 188411 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 293285 13469277 ~ 13470023 (-)
LOC117599099 NA non-coding upstream 482973 13658965 ~ 13728334 (-)
G225789 NA non-coding upstream 618240 13794232 ~ 13795138 (-)
nf1a nf1 other downstream 61227 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 69755 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 430061 12435206 ~ 12638725 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other downstream 661297 12388866 ~ 12407489 (-)
aipl1 aipl1,LOC106612843 other downstream 1848130 11188250 ~ 11220656 (-)
G225622 NA other upstream 191771 13367763 ~ 13368850 (-)
or121-1 LOC108277640,LOC108413776 other upstream 764930 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 848253 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1311501 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 1364485 14540477 ~ 14590536 (-)

Expression


Co-expression Network