G225619


Basic Information

Item Value
gene id G225619
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13358810 ~ 13359021 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU267043
gtgcgttgcttacctggggaagagatggcaccaggatgcactacgggaagaaggcaagcccgcggaggcagtgtgatgccctgggcaatgttctgctgggaaaccttgggtcctggcattcatgtagatgcTACTTTGACaaataccacctacctaaacattgctgcagaccaagtacaccccttcatggcaacaatattccctaatggcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267043 True 212 lncRNA 0.52 1 13358810 13359021

Neighbor

gene id symbol gene type direction distance location
gipr LOC108278000 coding downstream 64984 13271957 ~ 13293826 (-)
clip3 clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746 coding downstream 113748 13227560 ~ 13245062 (-)
si:ch211-137a8.2 LOC108278273 coding downstream 138435 13199488 ~ 13220375 (-)
si:ch211-137a8.4 LOC108278193 coding downstream 164924 13187922 ~ 13193886 (-)
capns1b LOC108278339,LOC108425806,LOC107700232,LOC107548486,LOC107655908,LOC105011036 coding downstream 194996 13157209 ~ 13163814 (-)
nova2 nova2,LOC108277822,LOC108440380,LOC103039352,LOC107669728,LOC107589717,LOC107756760,LOC104927796,LOC100701682,LOC107379798 coding upstream 20637 13379658 ~ 13426867 (-)
ankrd13b ankrd13b,LOC107743633 coding upstream 159716 13518737 ~ 13542215 (-)
map4l LOC108277464 coding upstream 212063 13571084 ~ 13588209 (-)
kcnh2a LOC108277613,LOC108440382 coding upstream 231182 13590203 ~ 13606464 (-)
pgm2l1 pgm2l1,LOC107684026 coding upstream 646987 14006008 ~ 14022045 (-)
G225410 NA non-coding downstream 182818 13068786 ~ 13175992 (-)
G225291 NA non-coding downstream 651435 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 996717 12360206 ~ 12362093 (-)
G224746 NA non-coding downstream 1277731 12080300 ~ 12081079 (-)
G224701 rtn4rl1,LOC107585598,LOC107664898,LOC107743721,LOC107744797,LOC107592642,LOC107685061 non-coding downstream 1382792 11973919 ~ 11976018 (-)
G225621 NA non-coding upstream 5382 13364403 ~ 13366491 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding upstream 110256 13469277 ~ 13470023 (-)
LOC117599099 NA non-coding upstream 299944 13658965 ~ 13728334 (-)
G225789 NA non-coding upstream 435211 13794232 ~ 13795138 (-)
G225791 NA non-coding upstream 446048 13805069 ~ 13805447 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other downstream 277950 13070136 ~ 13080860 (-)
nf1a nf1 other downstream 351251 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 359779 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 720085 12435206 ~ 12638725 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other downstream 951321 12388866 ~ 12407489 (-)
G225622 NA other upstream 8742 13367763 ~ 13368850 (-)
or121-1 LOC108277640,LOC108413776 other upstream 581901 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 665224 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1128472 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 1181456 14540477 ~ 14590536 (-)

Expression


Co-expression Network