G225652 (slc6a4,LOC106612651,LOC102787906)


Basic Information

Item Value
gene id G225652
gene name slc6a4,LOC106612651,LOC102787906
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13469277 ~ 13470023 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU267080
gaaagagagagagagGTTCCTGGCACTTACATGCACTTACGTATAGAACTCCTCGGCAGGCGAGATGGATTCATTGGTCCAGGAGATGTTGCTGTCGGTGGAGAGGTACTGCTTGCAGTTGGCCGTGTTCCAGGGGTTTTTGCATGTCGACCATGGAAGCGTAGAGTTGAAGGAGGACAACAGGTAATACAGAGCCCAGGCCATGATGGTGTTGTAGTAGAAGGCAATGTACAGGGCAATAATGCAGATGGCAAAGCCAAT

Function

symbol description
slc6a4 Enables serotonin:sodium symporter activity. Involved in regulation of thalamus size; response to toxic substance; and serotonin uptake. Acts upstream of or within monoamine transport. Located in endomembrane system; membrane raft; and plasma membrane. Implicated in several diseases, including alcohol use disorder; alexithymia; anxiety disorder (multiple); heart disease (multiple); and mental depression (multiple). Biomarker of brain disease; chronic fatigue syndrome; diverticulitis; and leishmaniasis.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267080 True 261 lncRNA 0.50 2 13469277 13470023

Neighbor

gene id symbol gene type direction distance location
nova2 nova2,LOC108277822,LOC108440380,LOC103039352,LOC107669728,LOC107589717,LOC107756760,LOC104927796,LOC100701682,LOC107379798 coding downstream 42410 13379658 ~ 13426867 (-)
gipr LOC108278000 coding downstream 175451 13271957 ~ 13293826 (-)
clip3 clip3,LOC107685098,LOC107714192,LOC107548591,LOC107669746 coding downstream 224215 13227560 ~ 13245062 (-)
si:ch211-137a8.2 LOC108278273 coding downstream 248902 13199488 ~ 13220375 (-)
si:ch211-137a8.4 LOC108278193 coding downstream 275391 13187922 ~ 13193886 (-)
ankrd13b ankrd13b,LOC107743633 coding upstream 48714 13518737 ~ 13542215 (-)
map4l LOC108277464 coding upstream 101061 13571084 ~ 13588209 (-)
kcnh2a LOC108277613,LOC108440382 coding upstream 120180 13590203 ~ 13606464 (-)
pgm2l1 pgm2l1,LOC107684026 coding upstream 535985 14006008 ~ 14022045 (-)
spcs2 spcs2,LOC107677086 coding upstream 580242 14050265 ~ 14053122 (-)
G225621 NA non-coding downstream 102786 13364403 ~ 13366491 (-)
G225619 NA non-coding downstream 110256 13358810 ~ 13359021 (-)
G225410 NA non-coding downstream 293285 13068786 ~ 13175992 (-)
G225291 NA non-coding downstream 761902 12706696 ~ 12707375 (-)
G224970 NA non-coding downstream 1107184 12360206 ~ 12362093 (-)
LOC117599099 NA non-coding upstream 188942 13658965 ~ 13728334 (-)
G225789 NA non-coding upstream 324209 13794232 ~ 13795138 (-)
G225791 NA non-coding upstream 335046 13805069 ~ 13805447 (-)
G225865 lipt2 non-coding upstream 593198 14063221 ~ 14066038 (-)
G225907 NA non-coding upstream 722748 14192771 ~ 14195082 (-)
G225622 NA other downstream 100427 13367763 ~ 13368850 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other downstream 388417 13070136 ~ 13080860 (-)
nf1a nf1 other downstream 461718 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 470246 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 830552 12435206 ~ 12638725 (-)
or121-1 LOC108277640,LOC108413776 other upstream 470899 13940922 ~ 13942617 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 554222 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 1017470 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 1070454 14540477 ~ 14590536 (-)
foxo1a foxo1 other upstream 1895336 15365359 ~ 15400777 (-)

Expression


Co-expression Network