or121-1 (LOC108277640,LOC108413776)


Basic Information

Item Value
gene id or121-1
gene name LOC108277640,LOC108413776
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 13940922 ~ 13942617 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU267276
cttattttatattcatacatGATGATTTTGAGAGTTTGCTTAAATTCCTCTGTAGAAACTACTCAAAAGGCCATGAGCACCTGTGTACCACACCTTGTTTCACTCTTAAATTTCTCTCTTGGCTGTTCATTTGAGATTTTTTCAAGTAGATTTGATAAGATACACATGCCTCCTGTGTTGCGTGTGATAATTTCAGTATATTTTGTGATCTGTCC
>XM_026934628.2
AAGTTCCTTGCTGAACTCAGTCAAAAGCTCATTGATATTTGCTTCTTAccatcttttatttgtttagtgcaAAGGAACTTTTGTGCACAGTGATCTTTCCATTTAGCCCTAAGTTTTAAAGAACTCTGTGTGCCACTGATACTGAAGTGATATGAACTCCTAAGGAAAATCTCAACATTGCTACTGATGCCTACACTCAACTACAGAGATCATATCATCAGTTTGAAAGAAACACATTTGTAAGAAAAGCAGATAAGCATACTcaatactatatatactatatatgcatctatatatatttttacaattgTCAGATCACTACAGATTTTTTGACTTGCTCTATTTGCCTGTACAGTCTCATTTTACACTTATTAAACTTAGTTTACTTTACTTACCTATGTAATTTAATCTTCAAAAAGAATCATGGTAAACTCAACACATTTCACTACTATTATACTGACTGGCTACTTTGAGGTAGGGCAGGCTAACTACATTTATTTTGCTCTTTCAATAATATTGTACATAACAATCATATTAGCAAATTCAGTACTTATTGGTGTAATTTGTGTAGAGAGATCCCTACATGAACccatgtatatttttctttgttgtttgtttcttaATGAATTATATGGCAGTGCTgcatttttcccctttattttaacaaatatattaaCCACATCCCATGAAGTTACAATTGCTTCTTGTTATGTACAGATATTTTGTCTGTATACTTATGCATCTGTGGAATTTGGAAGTTTAGCAATTATGTCTTATGACAGGTATATTGCTATCTGTTATCCTTTACTATATAGCAGTATAATGACTTGTAACAGGGTGGGCATATTGATTGTATTGGTTTGGGTTGTATCTTTTTTAAAGTTCaccataaacattttattaagttTACGCTTAGAGTTATGTGGAAATGTAATAGAGAAAGTGTGGTGTGACAACTATCTTCTTGTGAAACTTGCTTGCTCTGACACCAGTGTGAATAATATTTATGGTATAATTGGTGCCATAGTCACTATAGTTCTACCCTTAAtgcttattttatattcatacatGATGATTTTGAGAGTTTGCTTAAATTCCTCTGTAGAAACTACTCAAAAGGCCATGAGCACCTGTGTACCACACCTTGTTTCACTCTTAAATTTCTCTCTTGGCTGTTCATTTGAGATTTTTTCAAGTAGATTTGATAAGATACACATGCCTCCTGTGTTGCGTGTGATAATTTCAGTATATTTTGTGATCTGTCCACCACTTCTTAATCCTATTATGTATGGTATAAGGTTGGCTAAGATAAagacatctttaaaaaaacatttctatttaaagTAG

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process
GO:0016020 membrane cellular_component
GO:0004888 transmembrane signaling receptor activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU267276 False 215 lncRNA 0.35 1 13941004 13941218
XM_026934628.2 True 1347 mRNA 0.32 2 13940922 13942617

Neighbor

gene id symbol gene type direction distance location
kcnh2a LOC108277613,LOC108440382 coding downstream 334458 13590203 ~ 13606464 (-)
map4l LOC108277464 coding downstream 352713 13571084 ~ 13588209 (-)
ankrd13b ankrd13b,LOC107743633 coding downstream 398707 13518737 ~ 13542215 (-)
nova2 nova2,LOC108277822,LOC108440380,LOC103039352,LOC107669728,LOC107589717,LOC107756760,LOC104927796,LOC100701682,LOC107379798 coding downstream 514055 13379658 ~ 13426867 (-)
gipr LOC108278000 coding downstream 647096 13271957 ~ 13293826 (-)
pgm2l1 pgm2l1,LOC107684026 coding upstream 63391 14006008 ~ 14022045 (-)
spcs2 spcs2,LOC107677086 coding upstream 107648 14050265 ~ 14053122 (-)
rnf169 rnf169 coding upstream 111008 14053625 ~ 14060529 (-)
si:ch1073-280e3.1 cfb coding upstream 426467 14369084 ~ 14382872 (-)
nudt8 nudt8 coding upstream 451116 14393733 ~ 14399348 (-)
G225791 NA non-coding downstream 135475 13805069 ~ 13805447 (-)
G225789 NA non-coding downstream 145784 13794232 ~ 13795138 (-)
LOC117599099 NA non-coding downstream 212588 13658965 ~ 13728334 (-)
G225652 slc6a4,LOC106612651,LOC102787906 non-coding downstream 470899 13469277 ~ 13470023 (-)
G225621 NA non-coding downstream 574431 13364403 ~ 13366491 (-)
G225865 lipt2 non-coding upstream 120604 14063221 ~ 14066038 (-)
G225907 NA non-coding upstream 250154 14192771 ~ 14195082 (-)
G225908 rffl,LOC107561302,LOC107720964,LOC107704306 non-coding upstream 271841 14214458 ~ 14214852 (-)
G225950 NA non-coding upstream 339854 14282471 ~ 14284481 (-)
G225979 NA non-coding upstream 443336 14385953 ~ 14386164 (-)
G225622 NA other downstream 572072 13367763 ~ 13368850 (-)
wsb1 wsb1,LOC107746651,LOC107756317,LOC107587373,LOC107682796 other downstream 860062 13070136 ~ 13080860 (-)
nf1a nf1 other downstream 933363 12940910 ~ 13007559 (-)
akap1b akap1b,akap1,LOC108278245 other downstream 941891 12920963 ~ 12999031 (-)
bcas3 bcas3,LOC107743646 other downstream 1302197 12435206 ~ 12638725 (-)
abcg1 abcg1,LOC108277612,LOC108426925,LOC107684024,LOC107561305,LOC107755138,LOC107677096 other upstream 81628 14024245 ~ 14043774 (-)
zmp:0000001236 maml2 other upstream 544876 14487493 ~ 14536836 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other upstream 597860 14540477 ~ 14590536 (-)
foxo1a foxo1 other upstream 1422742 15365359 ~ 15400777 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other upstream 1869772 15812389 ~ 15844783 (-)

Expression


Co-expression Network