G227207


Basic Information

Item Value
gene id G227207
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16317697 ~ 16317922 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU268925
TAATATTTGGATGGGTGGTTAGTGTAGTGATACTATGTGTAAGTGTATGAAGTAAGGCAAATCTCAACACACAAATTTGAAGTTTGCTCcactaaatacattaaaatcatGAATTGACGCCATTGAGGGCAATTCAGTGGGAACATATAATCACCAGCTACTAAACTAATTCTGTTTTCAGGGTTTTTAGTGGATTAAAACATACAGGTGGAGAGTTTTATTTACT

Function

GO:

id name namespace
GO:0019825 oxygen binding molecular_function

KEGG:

id description
ko04974 Protein digestion and absorption

RNA

RNA id representative length rna type GC content exon number start site end site
TU268925 True 226 lncRNA 0.34 1 16317697 16317922

Neighbor

gene id symbol gene type direction distance location
egln2 LOC108278008,LOC108243533,LOC105901526 coding downstream 8007 16280788 ~ 16309690 (-)
tmem160 tmem160,LOC106537151 coding downstream 44157 16266578 ~ 16273540 (-)
ap2s1 ap2s1 coding downstream 200866 16108511 ~ 16116831 (-)
ppm1na LOC108277626,LOC108426978 coding downstream 293706 16017085 ~ 16023991 (-)
LOC113539270 NA coding downstream 302101 16008281 ~ 16015596 (-)
pitpnaa pitpna,LOC107685084,LOC107743636,LOC107548584 coding upstream 2156 16320078 ~ 16328662 (-)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710 coding upstream 12006 16329928 ~ 16352988 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding upstream 48272 16366194 ~ 16416374 (-)
vtna LOC108277704 coding upstream 142264 16460186 ~ 16465868 (-)
slc46a1 slc46a1 coding upstream 157013 16474935 ~ 16479647 (-)
G227002 NA non-coding downstream 211331 16103733 ~ 16106366 (-)
LOC117599083 NA non-coding downstream 225190 16091314 ~ 16092507 (-)
G226980 LOC108278227 non-coding downstream 286733 16030247 ~ 16030964 (-)
G226864 LOC108277678,LOC108277679,LOC108426971,LOC103047626 non-coding downstream 471527 15818624 ~ 15846170 (-)
G226831 NA non-coding downstream 480206 15809718 ~ 15837491 (-)
G227210 rilp non-coding upstream 40414 16358336 ~ 16438387 (-)
G227233 NA non-coding upstream 146014 16463936 ~ 16464136 (-)
G227256 NA non-coding upstream 216851 16534773 ~ 16535241 (-)
G227263 NA non-coding upstream 222933 16540855 ~ 16541061 (-)
G227281 NA non-coding upstream 238763 16556685 ~ 16556899 (-)
G227205 NA other downstream 352 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 152661 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 472914 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 916920 15365359 ~ 15400777 (-)
gab2 gab2,LOC107561751,LOC107724943,LOC107593477 other downstream 1727161 14540477 ~ 14590536 (-)
si:dkey-118k5.3 LOC108277747 other upstream 36742 16354664 ~ 16364336 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 912834 17230756 ~ 17250154 (-)
psenen psenen other upstream 1116133 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 2070586 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 2243500 18561422 ~ 18618921 (-)

Expression


Co-expression Network