G227233


Basic Information

Item Value
gene id G227233
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16463936 ~ 16464136 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU268955
CTTTACCTTTTCCCTAATGTTCTAACCAAAAGCACAATACCAGTACcaatacacatacaaatataaCAAACCATCATCGAATTACATACGTAAACCAACAACAGGGATGGGGGTGCACGTTTCATTACCTGATGAGAGAGATTaaacaagagagaaaagagatggaGGAAGGAGGAGTGGGGATAAAAGGTTTTGCTTCAG

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU268955 True 201 lncRNA 0.39 1 16463936 16464136

Neighbor

gene id symbol gene type direction distance location
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 47562 16366194 ~ 16416374 (-)
slc43a2a slc43a2,LOC107548581,LOC107685082,LOC107589710 coding downstream 110948 16329928 ~ 16352988 (-)
pitpnaa pitpna,LOC107685084,LOC107743636,LOC107548584 coding downstream 135274 16320078 ~ 16328662 (-)
egln2 LOC108278008,LOC108243533,LOC105901526 coding downstream 154246 16280788 ~ 16309690 (-)
tmem160 tmem160,LOC106537151 coding downstream 190396 16266578 ~ 16273540 (-)
slc46a1 slc46a1 coding upstream 10799 16474935 ~ 16479647 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding upstream 37428 16501564 ~ 16518551 (-)
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding upstream 56754 16520890 ~ 16524642 (-)
tspan13a tspan13 coding upstream 389043 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 401046 16865182 ~ 16878741 (-)
G227210 rilp non-coding downstream 25549 16358336 ~ 16438387 (-)
G227207 NA non-coding downstream 146014 16317697 ~ 16317922 (-)
G227002 NA non-coding downstream 357570 16103733 ~ 16106366 (-)
LOC117599083 NA non-coding downstream 371429 16091314 ~ 16092507 (-)
G226980 LOC108278227 non-coding downstream 432972 16030247 ~ 16030964 (-)
G227256 NA non-coding upstream 70637 16534773 ~ 16535241 (-)
G227263 NA non-coding upstream 76719 16540855 ~ 16541061 (-)
G227281 NA non-coding upstream 92549 16556685 ~ 16556899 (-)
G227286 NA non-coding upstream 96869 16561005 ~ 16561214 (-)
G227288 NA non-coding upstream 99352 16563488 ~ 16563694 (-)
si:dkey-118k5.3 LOC108277747 other downstream 99600 16354664 ~ 16364336 (-)
G227205 NA other downstream 146591 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 298900 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 619153 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1063159 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 766620 17230756 ~ 17250154 (-)
psenen psenen other upstream 969919 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1924372 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 2097286 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 3107537 19571673 ~ 19572614 (-)

Expression


Co-expression Network