G227288


Basic Information

Item Value
gene id G227288
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16563488 ~ 16563694 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU269010
CCCGGCTCTCCTGTACGGAGCAGTCCAGCGCAGGCACACGTCATTAGTATGCAGAGTGCACTGCAGTGTCACACCAGCCAGTTTCTCAAATCACcctttgattgtgtgtgttattatgttaatatattttggTTGTAACCGTGGTGATACAACACTGGAGTAAATGTTGtcataaagtgtttatttaatgctCACTCCATAACAGCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269010 True 207 lncRNA 0.44 1 16563488 16563694

Neighbor

gene id symbol gene type direction distance location
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 38846 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 44937 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 83841 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 97620 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 147114 16366194 ~ 16416374 (-)
tspan13a tspan13 coding upstream 289485 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 301488 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 542896 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 545829 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 578651 17142345 ~ 17145261 (-)
G227286 NA non-coding downstream 2274 16561005 ~ 16561214 (-)
G227281 NA non-coding downstream 6589 16556685 ~ 16556899 (-)
G227263 NA non-coding downstream 22427 16540855 ~ 16541061 (-)
G227256 NA non-coding downstream 28247 16534773 ~ 16535241 (-)
G227233 NA non-coding downstream 99352 16463936 ~ 16464136 (-)
G227291 NA non-coding upstream 2811 16566505 ~ 16566710 (-)
G227296 NA non-coding upstream 10262 16573956 ~ 16574192 (-)
G227319 NA non-coding upstream 80166 16643860 ~ 16644085 (-)
LOC117599111 NA non-coding upstream 153555 16717249 ~ 16723192 (-)
G227405 NA non-coding upstream 211159 16774853 ~ 16775075 (-)
si:dkey-118k5.3 LOC108277747 other downstream 199152 16354664 ~ 16364336 (-)
G227205 NA other downstream 246143 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 398452 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 718705 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1162711 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 667062 17230756 ~ 17250154 (-)
psenen psenen other upstream 870361 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1824814 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1997728 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 3007979 19571673 ~ 19572614 (-)

Expression


Co-expression Network