G227291


Basic Information

Item Value
gene id G227291
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16566505 ~ 16566710 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU269013
accagcttccTCTTCAGCATGTATTCTAATTACCAGTGGCTCACTTTGATCTGAGGCCTGCACTTCACACTGCTCCAGCTTCCCCAGGATCTCATTTCATTAGAGAGGCTCATTTCTTTTTGGCATACTTCTTATTTTACTGATACTCATTCCATTTTTCAGCGAGATATACTGCCTGACGTATTAACAGACTGCTTGGACACCCG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269013 True 206 lncRNA 0.44 1 16566505 16566710

Neighbor

gene id symbol gene type direction distance location
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 41863 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 47954 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 86858 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 100637 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 150131 16366194 ~ 16416374 (-)
tspan13a tspan13 coding upstream 286469 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 298472 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 539880 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 542813 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 575635 17142345 ~ 17145261 (-)
G227288 NA non-coding downstream 2811 16563488 ~ 16563694 (-)
G227286 NA non-coding downstream 5291 16561005 ~ 16561214 (-)
G227281 NA non-coding downstream 9606 16556685 ~ 16556899 (-)
G227263 NA non-coding downstream 25444 16540855 ~ 16541061 (-)
G227256 NA non-coding downstream 31264 16534773 ~ 16535241 (-)
G227296 NA non-coding upstream 7246 16573956 ~ 16574192 (-)
G227319 NA non-coding upstream 77150 16643860 ~ 16644085 (-)
LOC117599111 NA non-coding upstream 150539 16717249 ~ 16723192 (-)
G227405 NA non-coding upstream 208143 16774853 ~ 16775075 (-)
G227440 NA non-coding upstream 346249 16912959 ~ 16913160 (-)
si:dkey-118k5.3 LOC108277747 other downstream 202169 16354664 ~ 16364336 (-)
G227205 NA other downstream 249160 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 401469 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 721722 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1165728 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 664046 17230756 ~ 17250154 (-)
psenen psenen other upstream 867345 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1821798 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1994712 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 3004963 19571673 ~ 19572614 (-)

Expression


Co-expression Network