LOC117599111


Basic Information

Item Value
gene id LOC117599111
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16717249 ~ 16723192 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU269123
AAAGAAGTCATTTTTGCAATAGAGTTTCCCTTCTCGAGAAAAGCATTTCTCGGTCAGATTGCATTTGCACTCGCAGCACTGCACACACTTGATGTGCCACGCTCTGTCCAGCACATTGAGCAGGAACCTGTCCAGTATAGGCCTCTCGCAGCCTGCACAGTGGACCATCGTCTTTGGATGCTCTCCCACAATCACTGCTGCGTTTTTCTCCACAACCTGACAGCCTTTTCCTGTTaactcacacgcacacaaaaacacaaaagcgCTGAACGTTACTCCAAGTCTCTTGTAAGTCTTTGTGAACGGTTGCTGTACGAGAAACACTCAGGTGTCGACAGCACTTCTGCGTTTCGTCCAAAATAAAAAACCCCGAGCGATCAAACGTGAGCCTTCTCATGCAGGAGGAACCGGCAGAGCCTCAGCTGTCAGTCGTTTCGGTCCtcttccacacaaacacatttgcaGTGATGCAAATAAAGCCAGTGCACGTGGGTAAAGTTAAATCACCAACCGGATGTTGGCTACACGGGGAACACCATCACGCATCAGCAAGTTGCGATTGTTGTCAAGGTTAAGCATTGGAGAAAGAGcgatgaaggaaaaaaaagtgtctgttGGCAGAGCAGAATGCAACCGGAACCAGCAGACGAGAAGATCACATCAGAGCGCGAGCTGAGCGCACTTCACCACGTCCATGTGTCCACCGGCGCGCGCTctaataagataagataaccATCAAGCCACTTCAGAGTGCGTTTCCTTCAGGACGGGTGTCTCCTCCTCGGTGAGGTAAAAGAGGTGAAAGATGCTACAAAGGACAGGTTGTGTGTGACACGTCGTTGCGTTACTGACGCTCCTCACGCAGCCTTCAGTGTTCTGAATGTTCCCGCAAAGCGCACGAGCCAGACTTATTCACAGCCCCGTGACGTCACGGCAGGTCGAGACCAATCAGCATCTTTCCGTACAAGTGACCATTAGCTGTCTCTTCGCCGCTCTGCCGCTGCACTCGGTCCTATTTATAGGGAACAGAGGAAACCAATTGTCAAAAAAACCTCCAGAAAGTGTCATATCTTAGTAAATGTTGGGGATAGCCAGAAAGACGCAGAGCCTTGATGTATGCCAGTGcctttccttctctccttccctTTCTTTAAGTCTCCAGTGATCTGTAATCGACTGGGTAAAGAGGACTGGGGAGAATATTTTCATAAGGGAGGAAAGCGCGAGCCGCGGACCAGCTGTCAATCAGTGTGCAGAAGCGCCGGTCTGAAGAACAGCCTGAACTTGCAGCATGGCCAAACTGATTACTGGTGAGGCACGACTCAGGCACGAGCACTGCAATATATcacccactgcactgcttacCCATAATGCTCTACTGTGTTCTGCTCTGCACGATTGACACTGTTGGAATAAAGAGATCCTTAAACAGAAG
>XR_004579542.1
TGCACTCGGTCCTATTTATAGGGAACAGAGGAAACCAATTGTCAAAAAAACCTCCAGAAAGTGTCATATCTTAGTAAATGTTGGGGATAGCCAGAAAGACGCAGAGCCTTGATGTATGCCAGTGcctttccttctctccttccctTTCTTTAAGTCTCCAGTGATCTGTAATCGACTGGGTAAAGAGGACTGGGGAGAATATTTTCATAAGGGAGGAAAGCGCGAGCCGCGGACCAGCTGTCAATCAGTGTGCAGAAGCGCCGGTCTGAAGAACAGCCTGAACTTGCAGCATGGCCAAACTGATTACTGGTGAGGCACGACTCAGGCACGAGCACTGCAATATATcacccactgcactgcttacCCATAATGCTCTACTGTGTTCTGCTCTGCACGATTGACACTGTTGGAATAAAGAGATCCTTAAACAGAA

Function

GO:

id name namespace
GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269123 True 1435 lncRNA 0.50 2 16717249 16723192
XR_004579542.1 False 433 lncRNA 0.47 2 16717250 16722191

Neighbor

gene id symbol gene type direction distance location
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 192607 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 198698 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 237602 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 251381 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 300875 16366194 ~ 16416374 (-)
tspan13a tspan13 coding upstream 129987 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 141990 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 383398 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 386331 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 419153 17142345 ~ 17145261 (-)
G227319 NA non-coding downstream 73164 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 143057 16573956 ~ 16574192 (-)
G227291 NA non-coding downstream 150539 16566505 ~ 16566710 (-)
G227288 NA non-coding downstream 153555 16563488 ~ 16563694 (-)
G227286 NA non-coding downstream 156035 16561005 ~ 16561214 (-)
G227405 NA non-coding upstream 51661 16774853 ~ 16775075 (-)
G227440 NA non-coding upstream 189767 16912959 ~ 16913160 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 438319 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 563151 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 578871 17302063 ~ 17305362 (-)
si:dkey-118k5.3 LOC108277747 other downstream 352913 16354664 ~ 16364336 (-)
G227205 NA other downstream 399904 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 552213 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 872466 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1316472 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 507564 17230756 ~ 17250154 (-)
psenen psenen other upstream 710863 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1665316 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1838230 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2848481 19571673 ~ 19572614 (-)

Expression


Co-expression Network