G227405


Basic Information

Item Value
gene id G227405
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 16774853 ~ 16775075 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU269142
AGACGGTGGTGAGACCCAGAGTGAAACGCCTCTACCATGACTCTGTCAGCAGAAAGCATCTTTACGTAACACCTTGGGGGCCAAAACTGGCAGCCCAGTAATGAAGGTACAAATAAAGCGCCATGCTGAGATGATAGAATTGTCCCCAGCTCTCGAGCTCTCGCCTTCAATCGGGAGCGGCACTAGAAAGGAGAAGATAGGAAGAGCGGGCAGGGAGAGGGGG

Function

NR:

description
PREDICTED: serine-rich adhesin for platelets

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU269142 True 223 lncRNA 0.53 1 16774853 16775075

Neighbor

gene id symbol gene type direction distance location
crybb1l3 LOC108426910,LOC103042748,LOC106924296,LOC104922853 coding downstream 250211 16520890 ~ 16524642 (-)
unc119a unc119,LOC103043060,LOC108431312,LOC107704800,LOC107757471,LOC107548572 coding downstream 256302 16501564 ~ 16518551 (-)
slc46a1 slc46a1 coding downstream 295206 16474935 ~ 16479647 (-)
vtna LOC108277704 coding downstream 308985 16460186 ~ 16465868 (-)
myo1cb myo1c,LOC108277898,LOC107756890,LOC107743634 coding downstream 358479 16366194 ~ 16416374 (-)
tspan13a tspan13 coding upstream 78104 16853179 ~ 16857519 (-)
LOC113539389 lrrc72 coding upstream 90107 16865182 ~ 16878741 (-)
arl4aa arl4a coding upstream 331515 17106590 ~ 17109061 (-)
si:dkey-30e9.6 NA coding upstream 334448 17109523 ~ 17113260 (-)
LOC113539219 LOC108278006,LOC108426917,LOC107588234,LOC107752288,LOC107683449,LOC107582297 coding upstream 367270 17142345 ~ 17145261 (-)
LOC117599111 NA non-coding downstream 51661 16717249 ~ 16723192 (-)
G227319 NA non-coding downstream 130768 16643860 ~ 16644085 (-)
G227296 NA non-coding downstream 200661 16573956 ~ 16574192 (-)
G227291 NA non-coding downstream 208143 16566505 ~ 16566710 (-)
G227288 NA non-coding downstream 211159 16563488 ~ 16563694 (-)
G227440 NA non-coding upstream 137884 16912959 ~ 16913160 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding upstream 386436 17161511 ~ 17163585 (-)
G227640 NA non-coding upstream 511268 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding upstream 526988 17302063 ~ 17305362 (-)
G227755 NA non-coding upstream 630873 17405948 ~ 17407225 (-)
si:dkey-118k5.3 LOC108277747 other downstream 410517 16354664 ~ 16364336 (-)
G227205 NA other downstream 457508 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 609817 16119297 ~ 16165036 (-)
G226830 tcaf2,LOC108277678,LOC108277679,LOC108426971,LOC103047626 other downstream 930070 15812389 ~ 15844783 (-)
foxo1a foxo1 other downstream 1374076 15365359 ~ 15400777 (-)
LOC113539242 LOC108277733,LOC108277732 other upstream 455681 17230756 ~ 17250154 (-)
psenen psenen other upstream 658980 17434055 ~ 17438614 (-)
rwdd3 rwdd3 other upstream 1613433 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1786347 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2796598 19571673 ~ 19572614 (-)

Expression


Co-expression Network