G227786


Basic Information

Item Value
gene id G227786
gene name NA
gene type non-coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 17486631 ~ 17489432 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU269607
aaaaaacaaaactttaagTCTAATCACTACAAAATCACAAACTTTATTTGACTGATGTACAAAGGCATATATATCTGGCAGCTCTAAATGGTCAAATTAATTAAGTGTAGACAGCTCAGGTTTTCCTGTAGGGGATCTTCTTCTTGTACATACTGAAGTCTCTTCATCACAGGTGAGCCATAATTAAAGTAAGGGTTGTCAGCACTGaggaatCTGCTCATTCAGTTCCTTCTAGTTCACAGAAGTCTGGAACATGAGACAGATATTTAGACAGACACAGgaatgttcatttaacatttagggatgGTATTAGTACATGACATTGTACTGGCATTTTTCTGAATAGTTGCATTTCTCTATTCTCTGTAATCTGCACTGATTTACGTCGGAAACACCAGCGGAACTTAGAAACAATAAGGAACAATAACAGTTATAATAAAAGGAAATTTTCATGTACCTTTTGTCCGTGGAGATATTAAAAACCTATTGATCAACAAGCATCCCATTTTTGACTTAAAATTTTTCACCAAGTCATCTGACGTTTTCTCGTTACGGTCTGTAAAGACAAACCAAGAGTGTTTTAATCCTTGCATGCAAAATTTGATACATTGATTTGCATATAAACATACAAAAGCCACAAtcattatgtataaaatatgtatcaCCAGCTTCATAATGATGGActagaatattatttttattcagatcTAACAGCTAAAACTACTAGGGTAACATCTGAAATACCAAGATGTTTGTAAGAAAATATAAGTAACTTAAATCTGAACTGTTAAAACTGACTGACCAAATAACATGACTCTTAAAAAGCTGTTGCTGCGATGAAACTTGGCAACAATCAGACAGGTGGGGCATTTTATCCATTCTCCATCCAAGAACACTCCAAGATTTTCTGCTGTAAGTGGATGAATAGAATAACAGTGAGAAGACAGTTTCAAGCAATGAAACTCTATCagacaaatacaaatgcaaagaTCCCTCACTGATTCTGcttgatatactgtaaatgcatcTAAAATCTTACCCAAACCCTCTGTCATGACTGGATCCCTATCTGGGTGAATATGGTATGTCCAGGCCATGTTGATACACTGATCCTCCCTGCAATAACATAGTTTCTTTCAGTGACAGCCTGGTGTAGCCGATTGTTTGTTCACTATATGGTGAagaaattaaacttaaaaataatgatCCAGGAGCATCAGAGTAAACAAACCCATCACACTGTGCATTGTAGTGTCTTGTAGCTATTTGGGTGTTCAATTCAAGCCATATACTACAGAGAATGGCCAATCGCATTTGTGAAAtgtatacattacatttatttgtttgggtAATACTTTATGATTTACTCCTCCTGAGAGTTAATGGTCTGTCTCAAATGATTGTGCTGGTATTTGACCTCATGACCTTTTGGTCACTAGCTCAGAACCTTAATCAATCAGCCACCACCTCTTGccaaacatttttacacaaataagCCACATTTTTGCACCAGTGCATGAATGATTCATAGGCTTTATAAAAAGGATAATTATTTGGTAAAGTCCTTAGTAGTAGTTACTTATGCTATTGATCATTGTTAAAAGTGGCTTAAATGTTTGTTACTCACTGATGCAATGCTCCAGCCATAATCAGAGTGTTGTTTTCACCTTTCTTCAGTTCAACAACTGAATTATCCACTGACTTATAGCTTTCAATGTCCTCATCTTTCCACGAAGCCACTCCAATGTAATACCACTTTCCTAAATCTGGTCAGTAGACAGGACTTCACTGGACAAAGGAACTGGAGGAAGGCATGGCATTAGAACTTGTGCCACTGCATAAACGAAACctaatagttttaaaaaagtcatatCTTCAGCTCAGAGAGCATTCATACACAACCAAGACAGGTACACTGATCCCTTATTGCTGAGTGACACAGTGTCAGAGATCAGCACGTCCTTAAATATGTTTGAGAGTTCATTCACCTCAAGGGACATTGCGTGTGACCATTTAACCCTTTAAATTCCCAAGATCTTTCAGCAGGCCAAcacttacattcctcacttaAAGTCAT
>TU269609
aaaaaacaaaactttaagTCTAATCACTACAAAATCACAAACTTTATTTGACTGATGTACAAAGGCATATATATCTGGCAGCTCTAAATGGTCAAATTAATTAAGTGTAGACAGCTCAGGTTTTCCTGTAGGGGATCTTCTTCTTGTACATACTGAAGTCTCTTCATCACAGGTGAGCCATAATTAAAGTAAGGGTTGTCAGCACTGaggaatgtatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatatggagagatagaaagtatatttttaaaaatatatatatatttaatatattaataatcatattaaaattgatttttattttttgatatatgtaagtattaataatttttctgaaattatattACTTGAATACTATTATTTCAGTGAAAGAATAGAATTGAGTTAGGATATTAATATGAATAGCTACTACATTGCTGAAAACAACGCTGAATAAATCAATTTTTAGGTAGGATCAAACATGCAGCTGCTCTCAGACGATCTCATTACCTGCTCATTCAGTTCCTTCTAGTTCACAGAAGTCTGGAACATGAGACAGATATTTAGACAGACACAGgaatgttcatttaacatttagggatgGTATTAGTACATGACATTGTACTGGCATTTTTCTGAATAGTTGCATTTCTCTATTCTCTGTAATCTGCACTGATTTACGTCGGAAACACCAGCGGAACTTAGAAACAATAAGGAACAATAACAGTTATAATAAAAGGAAATTTTCATGTACCTTTTGTCCGTGGAGATATTAAAAACCTATTGATCAACAAGCATCCCATTTTTGACTTAAAATTTTTCACCAAGTCATCTGACGTTTTCTCGTTACGGTCTGTAAAGACAAACCAAGAGTGTTTTAATCCTTGCATGCAAAATTTGATACATTGATTTGCATATAAACATACAAAAGCCACAAtcattatgtataaaatatgtatcaCCAGCTTCATAATGATGGActagaatattatttttattcagatcTAACAGCTAAAACTACTAGGGTAACATCTGAAATACCAAGATGTTTGTAAGAAAATATAAGTAACTTAAATCTGAACTGTTAAAACTGACTGACCAAATAACATGACTCTTAAAAAGCTGTTGCTGCGATGAAACTTGGCAACAATCAGACAGGTGGGGCATTTTATCCATTCTCCATCCAAGAACACTCCAAGATTTTCTGCTGTAAGTGGATGAATAGAATAACAGTGAGAAGACAGTTTCAAGCAATGAAACTCTATCagacaaatacaaatgcaaagaTCCCTCACTGATTCTGcttgatatactgtaaatgcatcTAAAATCTTACCCAAACCCTCTGTCATGACTGGATCCCTATCTGGGTGAATATGGTATGTCCAGGCCATGTTGATACACTGATCCTCTGATGCAATGCTCCAGCCATAATCAGAGTGTTGTTTTCACCTTTCTTCAGTTCAACAACTGAATTATCCACTGACTTATAGCTTTCAATGTCCTCATCTTTCCACGAAGCCACTCCAATGTAATACCACTTTCCTAAATACTGGATTGGAAAGAACATAAAAATCATCAATATGGTgtgtatatacaaatacaatgaGGCCTGAAATTAACTGGAAATATCACACAGCTGTCTTGAAGAACAATTATAAGATCTACGGCTAATGCCAATTATGATAGCTAAAGATATCTTTTAATCTTACAATTGAAGTCTATAAGGTCAAGCAATATAAGGGGACTTTCCCCTTAGCCACCCACTTGGTGTGTTTGCCATTATCTCTCAAAACCGATGTagcataaaatacataattgaACTCTTACGAGAGTTTTCAGTATGCACTCACGTTATCATGCTATAATCTGATTAAATGTTGAGAAAAGACAATGTTTCTTACCTGGTCAGTAGACAGGACTTCACTGGACAAAGGAACTGGAGGAAGGCATGGCATTAGAACTTGTGCCACTGCATAAACGAAACctaatagttttaaaaaagtcatatCTTCAGCTCAGAGAGCATTCATACACAACCAAGACAGGTACACTGATCCCTTATTGCTGAGTGACACAGTGTCAGAGATCAGCACGTCCTTAAATATGTTTGAGAGTTCATTCACCTCAAGGGACATTGCGTGTGACCATTTAACCCTTTAAATTCCCAAGATCTTTCAGCAGGCCAAcacttacattcctcacttaAAGTCAT

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko04972 Pancreatic secretion
ko04974 Protein digestion and absorption
ko05150 Staphylococcus aureus infection

RNA

RNA id representative length rna type GC content exon number start site end site
TU269607 False 2077 lncRNA 0.37 3 17486631 17489432
TU269609 True 2290 lncRNA 0.33 2 17486631 17489432

Neighbor

gene id symbol gene type direction distance location
hspb6 LOC108277671 coding downstream 54315 17429752 ~ 17432316 (-)
lin37 lin37 coding downstream 66170 17414024 ~ 17420461 (-)
LOC113539361 NA coding downstream 148737 17328119 ~ 17337894 (-)
LOC113539084 NA coding downstream 159832 17317354 ~ 17326799 (-)
LOC117599112 NA coding downstream 187018 17299219 ~ 17299613 (-)
gabbr1a gabbr1,gabbr1a,LOC108277950,LOC108432983,LOC107586826,LOC107683297 coding upstream 28575 17518007 ~ 17568547 (-)
sh3bp5la LOC108277951 coding upstream 81096 17570528 ~ 17580546 (-)
mgat1a LOC108278272 coding upstream 93907 17583339 ~ 17589221 (-)
rnf183 LOC108277924 coding upstream 104759 17594191 ~ 17599439 (-)
dhx16 dhx16,LOC107704755 coding upstream 110618 17600050 ~ 17619892 (-)
G227755 NA non-coding downstream 79406 17405948 ~ 17407225 (-)
G227640 NA non-coding downstream 178907 17286343 ~ 17307724 (-)
LOC117599113 NA non-coding downstream 181269 17302063 ~ 17305362 (-)
G227589 lsr,LOC107582275,LOC107683161,LOC107730812 non-coding downstream 323046 17161511 ~ 17163585 (-)
G227440 NA non-coding downstream 573471 16912959 ~ 16913160 (-)
G228131 NA non-coding upstream 585164 18074596 ~ 18074799 (-)
G228188 NA non-coding upstream 928022 18417454 ~ 18418564 (-)
G228483 NA non-coding upstream 1116495 18605927 ~ 18608241 (-)
G228564 NA non-coding upstream 1521992 19011424 ~ 19012679 (-)
G228635 NA non-coding upstream 1859207 19348639 ~ 19348839 (-)
psenen psenen other downstream 48017 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 236477 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 1122295 16354664 ~ 16364336 (-)
G227205 NA other downstream 1169286 16316651 ~ 16317345 (-)
G226991 arhgap35,LOC107670284,LOC107574404,LOC107726507,LOC107724951 other downstream 1321595 16119297 ~ 16165036 (-)
rwdd3 rwdd3 other upstream 899076 18388508 ~ 18392745 (-)
pxylp1 pxylp1 other upstream 1071990 18561422 ~ 18618921 (-)
LOC117599059 LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323 other upstream 2082241 19571673 ~ 19572614 (-)
G228758 NA other upstream 2218883 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 4261703 21751135 ~ 21811084 (-)

Expression


Co-expression Network