LOC117599059 (LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323)


Basic Information

Item Value
gene id LOC117599059
gene name LOC108277539,LOC108262665,LOC108262697,LOC108278061,LOC108412323
gene type misc
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 19571673 ~ 19572614 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>TU270665
TGCAATTTAGCAATTGTAGACATGCTGTACTGTACATGTTCATGTCCAACTATGATAGGCATCCTTATAGTTGGCTATAAAACCATATCTTATGTACCATGCATCTTACAGATGTATGGTTTTGGTTTAGGTTTTGTGATGGAGGTGTTTACAATTTCTGTCATGGCTTTTGACCGATTAATTGCCATAATCAAGCCACTGCGCTACCATTCAATTCTGACAAATGTACATTCT
>XM_034310554.1
ATGGTTCAAAATGTTTCCAGAAAAAACATCAATGAATTTGTTTTTACAGGATTTGACACTATAGAAAAACCAGTGGCTGTTGGTATTGTCATACTTACTGTATACATTCTTGTAATGCTTGCTAACTTGGCAAACATATGCTTTATAGTCATTGATAAACGTCTACATCAGCCAATGTATGTCTTCATCTGCAATTTAGCAATTGTAGACATGCTGTACTGTACATGTTCATGTCCAACTATGATAGGCATCCTTATAGTTGGCTATAAAACCATATCTTATGTACCATGCATCTTACAGATGTATGGTTTTGGTTTAGGTTTTGTGATGGAGGTGTTTACAATTTCTGTCATGGCTTTTGACCGATTAATTGCCATAATCAAGCCACTGCGCTACCATTCAATTCTGACAAATGTACATTCTGTTATTCTCACTTTCTTGCTGTGGATCCTGGGTTCTGCTGCAATAGCAATTGTTCCTGGTACTGTGGTTCCTTTACCATTATGCTCCTCAACTATAAAGTATGTTTTTTGTGATTATGCAGCTGTTGTCAGAGCCACTTGTGTAGATCCAAACCCATATTTTGATTTGATATCAAGTTTCACCTCTTTCCTGATGTTTGGAAcattcagtttcatttgtttatcttatcttaaaatAGTTATTGTTGTTGTCAAAATGACCTCAAAAGGTAGCAAGAAAAAAGTGTTTCATACTTGTTTAAGTCATTTAGTAGTGATAATCTGCTATTATGGACCTACATTCATTCTAGCAGTCCTGACCAGACTTGGGGTAGTTTTATCACTTGAGGAAAGAAATGGTCTGAGAGCTGGGACAATTCTTGGTCCTTCATTAGTAAATCcctttatatattgttttagaactaaagagattaaaaataaaatattaagaatTGTGTCAAAAGTTGAACCAActgaataa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU270665 False 234 lncRNA 0.37 1 19572192 19572425
XM_034310554.1 True 942 mRNA 0.35 1 19571673 19572614

Neighbor

gene id symbol gene type direction distance location
LOC113539099 LOC108262697 coding downstream 2403 19565431 ~ 19569270 (-)
LOC117599058 NA coding downstream 13209 19556027 ~ 19558464 (-)
LOC113539141 LOC108278054,LOC100379178,LOC100379177,LOC100379176 coding downstream 20283 19550407 ~ 19551390 (-)
LOC117599057 LOC108278054,LOC100379178,LOC100379177,LOC100379176 coding downstream 26271 19544410 ~ 19545402 (-)
LOC117599056 LOC100379178,LOC100379177,LOC108278054,LOC100379176 coding downstream 33898 19536789 ~ 19537775 (-)
LOC117599110 NA coding upstream 5454 19578068 ~ 19578868 (-)
LOC113539100 LOC108277645 coding upstream 12020 19584634 ~ 19594663 (-)
LOC113539399 LOC108277553 coding upstream 161623 19734237 ~ 19751788 (-)
hmgb1b hmgb1,hmgb1b,LOC108433790,LOC103041093,LOC107682836,LOC107559000 coding upstream 183660 19756274 ~ 19759778 (-)
c4 LOC108277767 coding upstream 805055 20377669 ~ 20402977 (-)
G228697 NA non-coding downstream 6470 19564970 ~ 19565203 (-)
G228635 NA non-coding downstream 222834 19348639 ~ 19348839 (-)
G228564 NA non-coding downstream 558994 19011424 ~ 19012679 (-)
G228483 NA non-coding downstream 963432 18605927 ~ 18608241 (-)
G228188 NA non-coding downstream 1153109 18417454 ~ 18418564 (-)
G228748 NA non-coding upstream 112269 19684883 ~ 19685247 (-)
G228757 NA non-coding upstream 135096 19707710 ~ 19708280 (-)
G228817 NA non-coding upstream 183212 19755826 ~ 19756220 (-)
G229351 NA non-coding upstream 1129434 20702048 ~ 20704593 (-)
G229940 NA non-coding upstream 1631275 21203889 ~ 21236074 (-)
pxylp1 pxylp1 other downstream 952752 18561422 ~ 18618921 (-)
rwdd3 rwdd3 other downstream 1178928 18388508 ~ 18392745 (-)
psenen psenen other downstream 2133059 17434055 ~ 17438614 (-)
LOC113539242 LOC108277733,LOC108277732 other downstream 2321519 17230756 ~ 17250154 (-)
si:dkey-118k5.3 LOC108277747 other downstream 3207337 16354664 ~ 16364336 (-)
G228758 NA other upstream 135701 19708315 ~ 19708841 (-)
gdpd5b LOC108277648,LOC108433002,LOC103039705 other upstream 2178521 21751135 ~ 21811084 (-)
lyrm9 lyrm9,LOC107756492 other upstream 2633469 22206083 ~ 22224512 (-)
G231128 NA other upstream 3426853 22999467 ~ 23052039 (-)
LOC113539260 csnk1g2,LOC103468226,LOC106925954,LOC106953035,LOC108278103,LOC107718129,LOC107589861,LOC103394965 other upstream 3855364 23427978 ~ 23453315 (-)

Expression


Co-expression Network