tnfaip1 (tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792)


Basic Information

Item Value
gene id tnfaip1
gene name tnfaip1,LOC108277497,LOC108425816,LOC107728221,LOC107597551,LOC107657549,LOC107586309,LOC107729096,LOC107662792
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10211586 ~ 10218371 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923881.2
AGAGGGCAGCAGGAAATCACTCAACTTTCTGTGCCTTGTGGAAGTGTGatacagaagaagagaaaaaacacgTCGAAGGCATTTGGGCTAAAAGCTACAGCGTCGCTGTGAAAAACTGGCTGTTTGTCGCTGACATTAAGTTATTGTATCTgggaaatgtaatgtatatagCTGTCGGTCTCCTCTACTGGACCTATGAGCAGAAAAGAGCGGCTTATTGATCAGCTCCGAGCTATGTGAGGAAGTGCAGAAGCTCGCACTGGCAGCTTCCCCAGCGGCGTTCACCACGGCGGGAAACATCAAACCTACCGTGTGCAGGGTGGTCATCTACCTCCAGAGGGACATGTCGGGAGAGAGCTGCCTGCACCCGCTACGGCCTCAGGCCGACCCCGTCCTCTCCATCACTTCAACCGAATGTCCCAAGATTAAGAGCTGCAGCCAGCGAGGCACGGCGGGAAGCAAATATGTCCGCCTTAACGTGGGAGGAGCGCTCTACTATTCCACTGTGCAAGTGCTTACGCGACAGGACACACTGCTCAAGTCCATGTTTAGCGGCAAGATGGAGGTCTTCACCGACAAGGAAGGTTGGATTTTGATAGACCGCTGTGGGAAACACTTCGGTTCGATTCTCAGTTATTTGCGGGATGGAAGTGTAACTTTGCCCAAGAGCAGGCAGGCTGTCATGGAGCTTTTCACTGAGGCAAAGTATTATCAGATCCAGGGGCTGGTGGACTTGTGTCAACGTGCGCTTCAGGATAATATGCAGAAAGCTGTGTGCGTTATCCCGGTCATCACATCTCAGAAGGAAGAGGAGAGGCTGATACAGGGCTGTACAAGGCCTGCAGTAAAGCTACTCTACAATCGAGGCAACAACAAATATTCCTACACCAGCAACTCTGATGACAACTTGCTCAAGAACATTGAACTGTTTGAGAAGTTGTCGCTGAGCTACAATGGACGTGTGCTGTTCATTAAGGATGTAATCGGCGATGAGATCTGTTGCTGGTCCTTCTACGGGCAGGGCCGCAAATTAGCAGAAGTTTGCTGCACATCCATTGTCTATGCTACTGAGAAAAAGCAGACCAAGGTGGAGTTTCCCGAGGCTCGTATCTATGAAGAGACACTAAACGCTCTGCTTTATGAGACACTCCCAGTTCCTGACAACTCTCTCCTGGAGGCCACGCGCAGGCGAGCTCACTGCTGCTCACACAGCGAGGAGGATGAGAGCGTGGAGCTGAGAGAGCGAGTACGGCGCATACACATTAAGAGATACAGCACCTACGACGACAGACCACTGGGACATTAGCTGAGAA

Function

symbol description
tnfaip1 Predicted to contribute to ubiquitin-protein transferase activity. Predicted to be involved in negative regulation of Rho protein signal transduction; proteasome-mediated ubiquitin-dependent protein catabolic process; and protein ubiquitination. Predicted to act upstream of or within protein homooligomerization. Predicted to be part of Cul3-RING ubiquitin ligase complex. Orthologous to human TNFAIP1 (TNF alpha induced protein 1).

NR:

description
BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein 2-like

GO:

id name namespace
GO:0051260 protein homooligomerization biological_process

KEGG:

id description
K15074 BACURD; BTB/POZ domain-containing adapter for CUL3-mediated RhoA degradation protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923881.2 True 1313 mRNA 0.51 7 10211586 10218371

Neighbor

gene id symbol gene type direction distance location
sgsm2 sgsm2,LOC108277483,LOC107728220 coding downstream 2615 10163407 ~ 10208971 (-)
ulk2 ulk2,LOC107717276,LOC107657566 coding downstream 140859 10040742 ~ 10070727 (-)
LOC113532742 LOC108277821,LOC108277480,LOC108277478,LOC108277820,LOC108277479 coding downstream 345255 9839316 ~ 9866331 (-)
LOC113532826 LOC108277820 coding downstream 376499 9823069 ~ 9835087 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding downstream 388899 9717745 ~ 9822687 (-)
supt5h supt5h,LOC107657557,LOC107586261 coding upstream 102460 10320831 ~ 10342885 (-)
il15l NA coding upstream 127219 10345590 ~ 10356732 (-)
plekhg2 plekhg2,LOC106612677 coding upstream 139178 10357549 ~ 10400261 (-)
spint2 LOC108277494 coding upstream 194921 10413292 ~ 10426287 (-)
si:dkey-182i3.11 LOC108277482 coding upstream 264780 10483151 ~ 10488560 (-)
G223676 NA non-coding downstream 48214 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 110420 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 121596 10089643 ~ 10089990 (-)
G223437 LOC108277491,LOC108425811,LOC107662794,LOC107729125,LOC107586255 non-coding downstream 129469 10081581 ~ 10082117 (-)
G223410 NA non-coding downstream 172228 10038844 ~ 10039358 (-)
G223766 NA non-coding upstream 194085 10412456 ~ 10412680 (-)
G223808 NA non-coding upstream 342055 10560426 ~ 10611848 (-)
G223827 NA non-coding upstream 417785 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 538127 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 851313 11069684 ~ 11069958 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 498527 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1264687 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1732674 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2748087 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 3558168 6619172 ~ 6653418 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 89679 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 489881 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 969879 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2170495 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 2216835 12435206 ~ 12638725 (-)

Expression


Co-expression Network