sdhdb (sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715)


Basic Information

Item Value
gene id sdhdb
gene name sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8491788 ~ 8498469 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923882.2
CGTGGCCTTTAATTTTACGACGCGAGTCTTCGGATGACAGGAAGTGCTTCCGGGTGAAACACAGTGACCTTGGCTGCTTGTGATCGCTATGGCGGCTCTGGTGAGGATCAGCTCAGTGTGCAACAGGGGCGTTAGCCCTCTGTTATTCCGCAGCGCTTCTCTCATCAGACCTTTGGCAGCACAGAAAAAGGATCAGGATCACTTGTACTTTCTCACAGCCAAAATACACGCAACACCGGTTTATTATGCTGCATCTGGGTCTAAAGCTGCTTCACTGCACTGGACAGGAGAGCGAGTCCTGAGTGTACTTCTCCTAAGCATGGGTCCTATCGCCTATTTCTACCCCGGCCCTGCCATGGACTACTCCCTGGCTGCAGCGCTCACTCTGCATGGCCACTGGGGATTGGGCCAGATCGTGACTGACTACGTTCATGGAGATTCGAAAGTCAAGTTGGCCAGAGCAGGCCTCTTTATTCTATCCACTGTAACCTTTGCAGGTCTATGCTACTTTAACTACCACGATGTAGGGATTTGTAAAGCTGTAGCTCTCCTCTGGAGTAAATAGTTGGACTGTCATGAAGGGTTGACAAAGTGGTTCGGGTCctgaagggtttttttcttcccccccAGTTGATGTCCCAGTCGAATGTATACATTTGTGGgattaaatgtaaattctaTAAATATCATTTTGACAAGATATCACATTGATTCATGAGTGTTTGTAAATGCTGTTGACTAAATTGAATATTTTTTCTGCTTAAATTATGACagcatgtaagtgtgtgtgggggcgTCTGGGCTGACTTGGTATGTTTttgagagtgtgttagagctCATATCCACTTACTGTATTTCGTATGGATACcaagggacaaaaaaaaaatcagcatctgtttttttctgttagtCATCTGAATCATTGTTTTACACGTCAAAACCCACATAATGGTTGCTTTTCATTTATTGaagtatttttatacattgaaAACACTCGCATAAGAACCTGTCCTGGTTCTGCTTCACCTCCTGTTGTCTTGAAGGAATGCTTTCTGTTTGCTGATTAGCCGTAAACGATAAATTCAAAAGTAATTCTGATCTCAGCTTTTCAGTTTTTTCGGAGCACTGTGAGTCAGTGACAGCCATGGCTATTTAATCTACTGACTTTAAAATCTACCTTAAAAtctgtcagtatttttttcatGGCCTTAATTCTGTTCAAATTCAGCATTTTGTGTATAAATTTTACATGGCCTTAATTGTTTCAGCTGATTATATTTTGATATCTTGTCACTTATCTGCAACAATGGACAGAATATTATAAAATCAGTGGAGCCATCTGcttatgtatgcatgtgtaaatgtgtgtgtacaagctATGACATGACCACGAATGATGCCAGGCTCTATCATATTTGAATGCACAAGTTTGCTATGAATAAAGTCATTTGTCTTTGGCCTCTCTGAAATAAAGTCAGTTTTACTGAGTGGACTGAATCTTAAATGAATAAAGTTGTGCAAAGCCTC

Function

symbol description
sdhd Predicted to enable heme binding activity; succinate dehydrogenase (ubiquinone) activity; and ubiquinone binding activity. Involved in tricarboxylic acid cycle. Located in mitochondrial inner membrane. Implicated in Carney-Stratakis syndrome; mitochondrial complex II deficiency; paraganglioma; and pheochromocytoma.

NR:

description
PREDICTED: succinate dehydrogenase [ubiquinone] cytochrome b small subunit, mitochondrial isoform X1

GO:

id name namespace
GO:0006099 tricarboxylic acid cycle biological_process
GO:0006810 transport biological_process
GO:0005749 mitochondrial respiratory chain complex II, succinate dehydrogenase complex (ubiquinone) cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0046872 metal ion binding molecular_function
GO:0048039 ubiquinone binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K00237 SDHD, SDH4; succinate dehydrogenase (ubiquinone) membrane anchor subunit

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923882.2 True 1527 mRNA 0.41 4 8491788 8498469

Neighbor

gene id symbol gene type direction distance location
dixdc1a dixdc1 coding downstream 279716 8203662 ~ 8212072 (-)
LOC113532837 LOC108277602 coding downstream 354579 8122414 ~ 8137209 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 583930 7745299 ~ 7907858 (-)
jam3a jam3 coding downstream 899970 7578055 ~ 7591818 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding downstream 915511 7571201 ~ 7576277 (-)
il4i1 il4i1 coding upstream 4225 8502694 ~ 8512202 (-)
sik2b LOC108277697,LOC108436519,LOC107657230 coding upstream 64701 8563170 ~ 8613424 (-)
laynb LOC108277700 coding upstream 116968 8615437 ~ 8630154 (-)
zgc:162608 LOC108277432 coding upstream 147174 8645643 ~ 8647238 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding upstream 231473 8729942 ~ 8772841 (-)
G222591 NA non-coding downstream 504 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 249612 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 294581 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 328940 8162633 ~ 8162848 (-)
G222367 NA non-coding downstream 359084 8132363 ~ 8132704 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding upstream 46443 8544912 ~ 8548374 (-)
G222852 NA non-coding upstream 539011 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1259689 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1304023 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1388547 9887016 ~ 9895761 (-)
sorl1 sorl1,LOC107717255 other downstream 12876 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1028289 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1838370 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2467435 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2687815 5797928 ~ 5803973 (-)
G222809 oaf other upstream 442549 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1178790 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1809581 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2209783 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2689781 11188250 ~ 11220656 (-)

Expression


Co-expression Network