sik2b (LOC108277697,LOC108436519,LOC107657230)



Basic Information


Item Value
gene id sik2b
gene name LOC108277697,LOC108436519,LOC107657230
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8563170 ~ 8613424 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence


>XM_026923898.2
AACACGATGCCTCCCGCGAGTCAGCTCGCGCACTGGCGCTAATAAGAGCTGAAATATTATAGCTCTATTGTATCGGGGGAAAAAGAGAGGTGGAGAAGAGGAGGGAGGGGGGGACGCTTTTTTGGCGTGACACGTCGCACTTCTCCCAAACCTTTCCCAATTTCTCTCTCGCCTTTAGTTCGGCTACGGCGGCTGGCAGCGGTCAAAAGTGGCCGCGCGCGCGCTCTGGCGATTCCGTTTCGCTCATAGACATGGTTCTTGTTTTTAGTTCTGGCGGCTCGGTGCGTTCCGACCACCGCAGTGTTTTGACTCGAGGCTgaaagtgtgctgtgtgtttgtttggttttttttctcctccgtGTCCTGCTGTAAAGCATGGTCATGGCTGACTGTGAGCCGAAAGCGGCGCTCCGCGGGCCGGTGCGTGTGGGCTTCTACGACATCGAGCGCACGCTCGGCAAAGGAAACTTCGCTGTGGTCAAACTGGCGAGACACAGAATCACCAAAACTGAGGTGGCCATAAAGATCATAGACAAGACCCAGCTGGATTCGGTAAACCTGGAGAAGATCTATCGCGAGGTGAAGATCATGAAAATGCTGGACCACCCACATATCATTAAGCTGTACCAGGTCATGGAGACCAAGAATATGCTCTACTTGGTGACAGAATATGCCAAAAATGGGGAAATTTTTGACTATCTGGCCAAGCATGGACGGCTGAGTGAGCCTGAAGCCCGTCGCAAGTTCTGGCAGATTCTATCTGCAGTGGAATATTGCCACAACCGCAACGTTGTACACCGGGACCTGAAAGCTGAGAACCTGCTGCTGGACGGACACATGAACATCAAGATTGCAGATTTTGGCTTCGCAAACTTCTTCCAGCCAGGAAAGCCTTTGGCCACATGGTGTGGCAGTCCACCATACGCCGCCCCTGAAGTGTTTGAAGGACAGCAATACGAAGGACCACAGTTAGACATCTGGaGCTTGGGGGTGGTCCTTTACGTGCTGGTGTGTGGAGCCCTGCCTTTTGACGGTCCCTCTCTACCTGTGCTACGGCAGCGCGTGTTAGAAGGCCGCTTCCGAATCCCATACTTCATGACTGAAGACTGCGAGCATCTGATCAGGAGGATGCTGGTGTTGGACCCGTCCAAGCGGCTCTCGGTGGCTCAGATTAAGGAGCACAAGTGGATGGTGCTGGAGGTTCCCGTACAGAGACCCCTCCTCTACCAGCAGTCCAGCACGGCAGAGGACGACGCCGGACTGGGAGAGTACAGCGAGCAGGTCCTGAGGCTCATGCACAGCCTCGGCATCGACCAGCACAAGACTGTAGAGTCTCTCCAAAACAAAAGCTATAACCACTTTGCTGCAATTTACTACCTGCTGGTGGAGAGACTGAGAGCGCACAGATCCAGTTTCCCCGTGGAGCCGCGTCTGGATGCTCGCCAGCGCAGACCCAGCACCATCGCTGATCAGACCATGGTGAAGTCGAGCAGCGGCGCTCCCCAGGTGAGCCTAATGCCCCAAAATGTGCGTCTGCTGCGTTCGCTGGCTGTGCCTCAGGCCGGCGCCGACTCCTACGCCTACCCACAATCCTCCTGTGCGCCCGATCACAGCCtcatggaggaggaggtgggaaCTCCCAAAGTGGACGGCTGCATGCTGGACCCTCTGCCTCCGGTGGCGGTGCGGAAGTCCAGCACGTCGTCCCCCAGTAACATGATGGAGACGTCTATAGACGAAGGCATCGAGACTGAGGACCCGGATGCTGAAGAGGAAGCTGCACACGCCTTCAATGCCTACCAGACAACCCGCTTCGGCCagcgcagacacacactgtcCGAGGTCACCAACCAGCCGGGAGTGCTGAGCAGCGCAGGGAAGTTGTTCTCGCTAGGCAGCATGGACTCTGAGTACGACACCGGCTCCATGCACAGTGACCTGAGCCTGCTGGAGGATGCGTCCTCCATTAACGAAGCCGTTCTAGCCAACGCGTCCATCAGCCGCGTGACTCCACCTTTTATCAGCCGCGTGACTCCGCCCAACCCGGCCATGCATGTGCTGAGCTCACAGAGGAGAGAGACTCACAACCGCTCACCTGTCAGCTTCCGAGAGGGACGCCGGGCATCGGATACGTCACTCACACAAGGTATGGTGGCATTTCGGCAGCATTTACAAAATCTGGCTCGTGCAAAAGGCATCCTGGAGCTCAACAAGGTTTATGAGCAGATGGGCTCTGGGGAGAATCCCTCGCTAGGACCGTTGAACCcccagacacacccacacaaccCTCTGGATCCCTTACTGCAGGGAGGTGGATGCCACCAGCATGACATGGCGCTGTACTCAGGTGGACCTTCACTGTCCAGGAGACAGAGTCTGGAGCCGCAGTACCCCTCACACAGAATGCCGAAAGCGAACCTGATGGCCAGCCCCGGGAGCTGCCATATGTTCTGTAAAGAGACTCCTCGCAGCCTAGAACAGCAGCTGGCTgagcacagGTTGCAGCAGAAGAGGCTGTATCTTCAGAAGCAGTCTCAAATGCAAGCCTATTTTAACCAGATGCACATAGTGGACGGGACGTATGCCTCTTGCCCACCAATAAGCCACCAGGACTCTCAGGCCCAAAGCTCGATATCACACCAGCAGCAGAATACGCAGCCTTTCGGTCCTATGATGGAGCCTGGCAGTGACACCCTGACCTATGACCCCTACCTGGGTCATTACCCCCAGCTGCAGCACTCCTCTCTTCCCCCTGGCATTCCCACCCAGCTCCAGAGTCAGCAGCCCTACAGCTACCAACCGCATGAGCCGGGCCATTGCCAGCTGGGTGAGGTTCTGTACCAGGAGCAATACGATCCCCCGCTGGAGCCTGGCCAGCCTCCTCCCCTGTGTGCAGCAGCAGGGGTGCCAACTCCGCACCGGGGTACGAAGGCCTCAAAATGGCAGACGCCTTCAGACAGTGAGATGATGGAGACGGTGGACTCGCAGCACGGCTTCGTGCTGGTCAAATAAGCCTGATCGATTGTGAGAGGTACACAGTATTACCTTGAGTTCTGATTTCGGAATAGggagaaaggaggaaaaagatACAGGTACAGCAATTGACCACAGTTTGCGTAAAACAAGAACTTTTTGGtcacattcttttgtttttcaacCTGAATCCTCCCGAACTCCTCGAACGCTCTCCAGTGACTGTGTTCTCCCAGGAAAACGCTATTGGAGGAGCATGGTTGGAACTGTGAAAGCTCTCTTCTCATCCTGGACTGACAAACAGCCATGTTAGTTCAAGCTGGATGTTTTCGTGTAGCATACACAGCTGAGATACGCCCAGCGGAGCCTGGCCAAGAGCACAAACTCATGACACGTTTGGTATTGACACAGAACAAATGTTTCACTCTTGTCATCTTTAGTTTGTGGGCTGTCTTTTGAGGATGAAACTTGTTCAATTTGCACGCTTGTTAAGTGCAGTGTTAGAACTTCTACAGCAATACTGAAGCAATAGAATCATGCTGGATTGAACAAAGCCATACTTTTGGGACAAGATGCAGTTCAAACATTGGATGGTGGGAATGATTGTCACATGTCACAGCCCGCTTTGGTTTCATCCCACAGTCCATAAGTACGCATTTTCTATTCTGTAGTATTGTTGCTTGCTGGTAGGAACAGTCTAGAAACAAATTCACTACTGTTTTATTACAGCAAAGCAATGTGGGATGAATCACAATATCCTTCTTACACTGTTGATTAACAGGGAGGAGCTGTATCGTGGATGACACTACCGTCTGGGTGTGTTCACCACGTGAGCATGGCGTTTTCCATTGAACTCCTCCAATTATGATTGACACTACATGGATATCTGAAGGAATGTGTTAATATAAAAGGTTTCATTGGAAATTTTAGTCAACACTGGATTATGGCCAACTGATCatgttcattcttttttttcagcactcAGCAAATCTACTTGAATAGGGTATGTGATTACAGAATTCTGGTAAATAGGAGAAAGAAGGTTGGTAAACGTTGAGGCTTTGCAGCAGAGGTCAGCTTCTGGCCAACATGATCCTGGagcactttttgttttgtttttttttttcccaaggaAGCAAAAGGAAATGTAGCGAATGTGGATGTAGCAGTCCAACCTGCTCTGCTAGTCCTGTCAAATAAAACCAAGAGACATCAAATTCTGCTCTCGCCAGTTACGTAAACGACAAGCCGCTCCATCTGACGCTGCAGGAGTCTGACGCTCCACTCAGTGCTTGTTGTAGGCTGTGTATAAATTAGGGGCAAGACGCCGTTGAAGAGCTTTCACAACATAAGGAATCCTTTTTAGCGTGATAGTGTTCAGTGTgccttttctttattctttctaAATTAAGATCCAAATAACTATTTTTCGGTTTGATTCTCTTGCTGGTCTGGTATAAATAACAGGATTTAAGTAGAACCAGGTTTTTTAAAAGGTACAAAACCAAAGTCCTCTCCGAAGTTTCCCTGTACAAGGCCACCATGTGAAGTTTGGCGCTTATTGTTTAGTTAATAGACAGTGCTTTTCTTTGTCAATCAGTATACACAGATGAAAAGAATTAAGAGCAATATTTGTTATGAATACTTATAAAAGAATCATGAATGTGTTACAGTATCATAATCACATTTCCAGCTGCCAAATACCGTTCTTTAGAAATCCAGTTCTATATTTAGGCTCATCGTTGTGACCACACATAAGCTAACCTGCAGTCGAGATTAAAAGGTTTGTGAACAACA

Function


NR:

description
serine/threonine-protein kinase SIK2-like

GO: NA

KEGG:

id description
K16311 SIK2; serine/threonine-protein kinase SIK2

RNA


RNA id representative length rna type GC content exon number start site end site
XM_026923898.2 True 4770 mRNA 0.51 16 8563170 8613424

Neighbor


gene id symbol gene type direction distance location
il4i1 il4i1 coding downstream 50968 8502694 ~ 8512202 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding downstream 64701 8491788 ~ 8498469 (-)
dixdc1a dixdc1 coding downstream 351098 8203662 ~ 8212072 (-)
LOC113532837 LOC108277602 coding downstream 425961 8122414 ~ 8137209 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding downstream 655312 7745299 ~ 7907858 (-)
laynb LOC108277700 coding upstream 2013 8615437 ~ 8630154 (-)
zgc:162608 LOC108277432 coding upstream 32219 8645643 ~ 8647238 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding upstream 116518 8729942 ~ 8772841 (-)
scn3b scn3b coding upstream 161722 8775146 ~ 8796028 (-)
LOC113532830 LOC108277452,LOC107578747 coding upstream 186043 8799467 ~ 8814548 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 14796 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 71886 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 320994 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 365963 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 400322 8162633 ~ 8162848 (-)
G222852 NA non-coding upstream 424056 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1144734 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1189068 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1273592 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 1317932 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 84258 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1099671 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1909752 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2538817 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2759197 5797928 ~ 5803973 (-)
G222809 oaf other upstream 327594 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1063835 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1694626 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2094828 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2574826 11188250 ~ 11220656 (-)

Expression



Co-expression Network