si:ch211-149e23.4 (LOC108278242)


Basic Information

Item Value
gene id si:ch211-149e23.4
gene name LOC108278242
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 5536198 ~ 5549047 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923908.2
tctAATTGTTGACTCTGACCtcctctcatacacacatcatGCCCACTTCTCCCTAATCTATTGAAGCATCttgcaaaacatttttgaaacTTTCTTGCAACACATTTATCTTGACTTGACCATGTTTTTGTCAATATTTGTGGCATTTGGACTTCTCCTTAATCTCCCTCAGAGCTTGGAAAATCAAGAGGTGGTCTTAAGAGACATCATTATTGACCATAATGTGACAGGAGTCTTAGGAGAGGAAGTACACCTGCGTTGTTTGTACTCTGGCAAACACAACATCAGTGATTCTTCCTGGAAGCGCCTGGATTCAGGAAATAGAGCAAAGATGATGGCAGGACACAAAAATGGCAAGACATTCGCCAAAGACAACTTCTCCACTCCAGCATCCCACACCAATCTTACTGTGAAAGTGAGCATAAACAGCTTAGAGGTAGAGGGACAGTATGCATGCGTGTTTAGCACAGAAGAAGAGGAAATAATGGATAGCCTGTTCCTTAGTGTAATTGCCCGGCCCCGTGTGAACATCCATGCAGAGGAAGACGTTCTGAATGAAACTCATTACCAAAGCATCTTCTGTTCAGCTTCCTATGCCAAGCCCAGTGCGAGTCTCCATTGGGACATCCATGGGGCTCCACCCAGTGAGCGCATTTTCTCCATCCAGAACACATGCTCTACACTGCCAAACGGCACAGTCAGTATTGTCAGCATGCTACGATTCCCCATCCACTTGAATAATGAAGATAGTGTTGCCTGTGTGATTCGGCACCCAGCTTTGACTGAACCTAGCACAACTGTAATAAAGTTACAGACATTTGTTTCTCCAAATGTAACCATGGAAGTGGCCCTGattgaaaaagaaggaaaagccTTCCTTGAGGTCCTCTGCAGAGCAAAAGGAGGGAGGCCTCATCCGTCAATCACTTGGATCCAACCTGAATATGCAGACACATCATGCACTGATCATTTCAAGAAATCTGATTTGGCTTCTAGTTCTCACTGCTTCCCATTAGATGTTTATGAGGGTGAAAATATCACCTGCATTTTTGGTTACCCACATCTTTCCATAAAGAGAAATGTTACGCTGCCAACATACTATCTCACCGCTCTTCAGCTGACAAACAGCAGTATTAAGGTGAACCGTTTAAACACCTCTGATTTAGTGATATTAGAAGAGGAGGACAGTGACATCAGAATCAGCATGGAAGTGTTGGGAAATGTCCCAAGATATAAAATTAATTGCACAAAGGATGGTGAACCTCTGTCAGACGATGTGAATATATTTGTCAGTGGTCTCATGATAAACGGTGCTGTTGGGGCAAATCATGCGGGCCAATACCAGTGCCAAGCCTCCTACTACAGACATTCAGCCTCTTTACAGTTTGAAATAGAAGTGAAGCCCAGAGTCCGAGTACCAGCTCTCATCAATGTGACACTGCTCTCCAATACATCTTGGGAGAATGGGATTGAGTATACAGAGGTGAAATGCATGGTAGATAATGTGTTTCCTGATGCCAATATTACTTGGGATACAGGAGACTGCAGAAGTAGAATCAGTACCTCTGAGCCTGGAAATGTAGTGTCTGGAAGTCAGCAGGACCACGGTGTGGTTTGGAACACAGCACGGTTCCCAGTTAATTCTTATGCAGGATGCACAGTAATTTGTGTGGTGCATCACAACGGGTTAGAGAAACCGGTACAAAAGAGCATTCATATCCCTTTAATAGGACCACCCAGAAGTTATGTGAGCATTGGTTTGCAGAAAGACTCCACACACTgggctgctgtgtgtgaatACAAAAGTGATGGGGCCATAACCAACATCTCCTGGGTCATTTCTGATACCAATACAACTGCCTTACCTTTGACCAGAAATACCTCAAGAGAGGGCAGTAAGGTGCTTGCcacatgcatttataaatttgaGCTGCGCCAGCATGAGGGAAAGTTCTTGACTTGTGTGATCCAAAACGTAAACGGGGAAGTTGAAAGGAGAACCATACATGTCCCAAATTTCTTTATCTCATCTATCGTGGTTTTGAACAAAACTATTCCACTGCATGGGAGCCATGGGCAACATACTGGCTTGCACAGAGTTGCATTGAAGGAACATGTTTCCAATCAGAGGATAATTTTTAGAGTTAATGGAAATGCATCAGCAACTAATATCAAATGTTTAAGATCCAATGGACTTTCTGCCCACACTGTTGGTATGGCCCTGGTTTTTGCTCAGCAAGTGTCAGAGAGTGATGCTGGTTTGTACACATGCATTACATCCTGGTACCATCACAATGCCACAGTCACTGTTCTGGTGGATGTAACCAGCCAGGAAATCCACAGCATGATGCTTATCCTGATCTGTTTCTCCTCTGCTGTTGTAATTGCCCTCATACTGATGATCACACTCTGCATATTCTGcaaaagaaatgaagaaactcATTCTTCAACCCAGGACTGGAAGAAGCGCGAGTCTCTGGCTGCCCTGATGCAGGACCCACGCTCACCAGACCTCAAGAAGGCCAGAGGGAAAGGGCAGGAGTATGCAGAGCTAGTGCACTACTCCATAGTGATTGATGTGAAAAGTATGGTGTGAGGGCAGGTTTGAGTATTCAGAGGTGTGAAATGTGAATAGATTTTAAAAGAGCAGCATGCTACTTTTGAGTAACAGTGCATGTATATGAATGTAAAACTAcgatttaaaatgtattcattactgttatatcactttttttttttgttttacagtgatgatgttttgtcatttttgtgatCTGAATTAACTCATTAAAAGACTATAGTGCTTTCATTA

Function

NR:

description
uncharacterized protein LOC110507741 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923908.2 True 2812 mRNA 0.43 13 5536198 5549047

Neighbor

gene id symbol gene type direction distance location
LOC113532491 dnhd1 coding downstream 47954 5451275 ~ 5488244 (-)
LOC113532789 flj13639,LOC108278219,LOC108433977,LOC103025652,LOC107725108,LOC107670134,LOC107669913 coding downstream 132880 5393818 ~ 5403318 (-)
kbtbd3 kbtbd3 coding downstream 393231 5137303 ~ 5142967 (-)
tomt LOC108277653,LOC107679441,LOC108411353,LOC107557662 coding downstream 422243 5110668 ~ 5113955 (-)
folr LOC108277654 coding downstream 437208 5094843 ~ 5098990 (-)
diabloa LOC108278350 coding upstream 57657 5606704 ~ 5609015 (-)
LOC113532847 LOC108277604 coding upstream 72459 5621506 ~ 5622471 (-)
ywhag2 ywhag2,LOC108277419,LOC107582613,LOC100700540,LOC107694031,LOC103021402,LOC101160255,LOC107592751,LOC108437655 coding upstream 183688 5732735 ~ 5743421 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding upstream 219580 5768627 ~ 5772520 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding upstream 237966 5787013 ~ 5796975 (-)
G220884 NA non-coding downstream 32256 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 47190 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 81275 5454596 ~ 5454923 (-)
G220834 NA non-coding downstream 92496 5443492 ~ 5443702 (-)
G220826 NA non-coding downstream 119203 5416785 ~ 5416995 (-)
G221026 NA non-coding upstream 246081 5795128 ~ 5795453 (-)
G221068 NA non-coding upstream 321354 5870401 ~ 5870627 (-)
G221214 NA non-coding upstream 542866 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 654017 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 777044 6326091 ~ 6416808 (-)
LOC113544632 arap1 other downstream 564679 4897950 ~ 4971519 (-)
LOC113544484 NA other downstream 1719363 3740282 ~ 3816835 (-)
igsf11 igsf11 other downstream 1729084 3727377 ~ 3807114 (-)
G219642 NA other downstream 2572848 2887907 ~ 2963350 (-)
nectin3a LOC108278241 other upstream 1372 5550419 ~ 5599375 (-)
G220990 NA other upstream 161051 5710098 ~ 5710891 (-)
LOC113532612 LOC108277970 other upstream 248881 5797928 ~ 5803973 (-)
dynll2a dynll2a,LOC107554284 other upstream 472098 6021145 ~ 6024353 (-)
LOC113532805 NA other upstream 1070125 6619172 ~ 6653418 (-)

Expression


Co-expression Network