c1qtnf5 (c1qtnf5,LOC107690457,LOC107601727)


Basic Information

Item Value
gene id c1qtnf5
gene name c1qtnf5,LOC107690457,LOC107601727
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 9585644 ~ 9589292 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923914.2
tttctctaaTTGGCTTGCATTCCCATTTCCTCTTTCAAGCGTCAGAGTGCTCACTTTTTCCCAGGCTCCGTAGTCTGGGATACAAAAGTTTCTCTCTACTGTTTTCGTTTCAATCTGCTCAGAAACTGTCACTTCTATGAAGTTCTGAAGAATTAATGACTCAAAGAAATGACACCTCTCCAGTCCTGGGCCCTCTCCCTCCTTCTTGTTTTGCTGGCACACTATTCAAATCCACTTGAGGATAATAAGATTCACAGTCTGTGTATGGGCAGCCCAGGTACCCCTGGTTCTCCAGGGTTGCATGGCAGGCCAGGACAACCAGGCAGAGATGGCAGAGATGGGCGAGATGCACCACTGGGGGAGAAAGGGCAAAGGGGAGATCGTGGAGAGCCTGGTGAGCCAGGCGTGAGGGGCCTGACCGGAGACAGAGGTGATCCAGGAGAGAAAGGTGAGAGGGGACCCTCAGGAGAGTGTGCTGTGGCTCCTAAGTCAGCATTCAGTGCCAAGTTGTCTGAATCCCACACCATGCCATTAGCAGTAGGGGATGCAGTGCGCTTTGACAAAATCATCTTGAATGAGCAGGGCGATTACAACGCAGAGACTGGACGCTTCACATGCAGGGTGCCAGGTGTTTACTATTTTGCCGTCCATGCCACCGTGTACCGCTCCAGCCTACAGTTTGACCTTATGAAGAATGGACACGCCATGGGCTCCTACTTCCAGATGTTTGGCAACTGGTCCAAGCCAGCCTCATTGTCAGGAGGCACTCTGCTGCACCTGATTCCTGGCGATCAGGTGTGGGTGCAGATGGCTCTGGGCGAGTATACAGGCTTTTACTCTAGCCCGAAGACAGACAGCACCTTCATTGGCTTCCTGGTGTACTCTGATTGGAAAAACTCTGCTGTTTTTGCTTAGATTTAAGGTACATACTACTTCTGGCTTTCACCCAAAAATGCTCAAATACTCAAAGCActacaaagatttttttcacatttgtatttattctttGTAAGCAAATTATAAGTGCTGGAAGATTTTCATTCCATGATGTGATACAAACTAGTGTCTTGAAGGTTGTGAGGGAATCTGCAAAGCAAAACAGATATACACACTTGCTAACAAGAACTTACCACTTGCACAGTTTTTTCTTACGCATTGTATTGCAACAGTTATAGACAAACGCCAGTGAtctttttaatgtctttttcaAATAGACAATACACACAGCCTCACATGGCCATTATGTAATTGTCGGTAAATAAAGTATTACATAAAAGACTGGTAGCTTTTGTGTATAATATTTCTGTCACTGAAAGCAAAAAATCTGCACAACAATATAAACTGATgcaaaaatatcattattttgGTTTTACTATGGATTCATTTATTCTTCTACCAATTAAAAAAGCAATAGCAGAGCACCTTTAAATTCTGACTTAAATAAAGTTAATCTTTGAGATTGAA

Function

symbol description
c1qtnf5 Predicted to be located in extracellular region. Is expressed in eye. Human ortholog(s) of this gene implicated in isolated microphthalmia 5; late-onset retinal degeneration; microphthalmia; nanophthalmos; and retinitis pigmentosa. Orthologous to several human genes including MFRP (membrane frizzled-related protein).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005581 collagen trimer cellular_component

KEGG:

id description
K24212 C1QTNF5; complement C1q and tumor necrosis factor-related protein 5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923914.2 True 1464 mRNA 0.44 3 9585644 9589292

Neighbor

gene id symbol gene type direction distance location
mcamb mcam coding downstream 18290 9533050 ~ 9567354 (-)
LOC113532830 LOC108277452,LOC107578747 coding downstream 771096 8799467 ~ 8814548 (-)
scn3b scn3b coding downstream 789616 8775146 ~ 8796028 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding downstream 812803 8729942 ~ 8772841 (-)
zgc:162608 LOC108277432 coding downstream 938406 8645643 ~ 8647238 (-)
kmt2a kmt2a coding upstream 5662 9594954 ~ 9635702 (-)
ube4a ube4a,LOC107718272,LOC107690452 coding upstream 47279 9636571 ~ 9648239 (-)
pdzd3a LOC108277664 coding upstream 66290 9655582 ~ 9664634 (-)
nlrx1 nlrx1 coding upstream 75619 9664911 ~ 9674446 (-)
LOC117599039 LOC108277821,LOC108277820,LOC108277479,LOC108277480,LOC108277478,LOC108411099,LOC108411100,LOC108411104,LOC108411102,LOC108411101 coding upstream 128453 9717745 ~ 9822687 (-)
G222852 NA non-coding downstream 541893 9037480 ~ 9043751 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 1037270 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 1094360 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 1343468 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 1388437 8196805 ~ 8197207 (-)
LOC117599042 NA non-coding upstream 168866 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 213200 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 297724 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 342064 9931356 ~ 9978560 (-)
G223408 NA non-coding upstream 446450 10035742 ~ 10035982 (-)
G222809 oaf other downstream 638745 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 1106732 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 2122145 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 2932226 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 3561291 6021145 ~ 6024353 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 87967 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 718758 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 1118960 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 1598958 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 2799574 12388866 ~ 12407489 (-)

Expression


Co-expression Network