map6b (LOC108277516)


Basic Information

Item Value
gene id map6b
gene name LOC108277516
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7174352 ~ 7186264 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923918.2
GCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGCCAGAGAAGCCCAGTGTGTCCCATTCCAAACCCAAAAAGACGACAAGCCATAGTAAAACAGCAAGTAAAGCTAAAGCAAGGCCGAACACTGGAACCCAACCTGCCAAGAAGAAAAGCTCTGTGAGCAAGCTGGAGTTAAAGCCAGACGGAGGAGTCACcaagaaaagtaaagaaatgatTAACAGACTGGCTGAGGGAAAAGAATAGATGCAATTCTGTGTGTGAATTTGGGTGAAAGGGGTCTGTGCTCTGCTGCTAGAAGACTCACTTTTATTTAAGCCCAATTTCAGTCTTTTAGGCTTTCAAGTATGGATTGTGGATTGGGATTTGACAGCTTGCTTTGCCTTGAATGTGCCATCATTGCATAATCCATAATGATCTCTAATCTTTTTACACAAACCTTAAGCTTTATTGCATGAAATTTGCCCTTACCATAAATATGTGATTAGAAATGTACTATTAGAAATTTGTAGTTATTATCATTGGGCTTTGATCACAtgacatttttacaaacaaTTATTACACACCCCAACTGGATTTAAATCACATATAATATGCACTGATTAGAGGTATTAATTGAATTGCACATGTATCTGGCTCCTAGTAGTTTCCTTCCCAGCATCCCACTAACTAATTATTGAAATGGTATTTCATATAGCAAGTACATCAACAAACACTAACAATGAGCCAGATTAATTATAGCTTTTAGCACATGATAAAATGATTAGTGCATGCACTTCCACGATCATAATTCATTGCCCAGTGCACTGCTTTTTCATCATGTCATCTAAAGTGCTGCTGAAACATTAACAAATCAGGCCCATAGTCTTTCAGGATACACacgaaaacaaaataaatgagtGTTATAAAATACATACACCACTGTTTTCAGACCTTTCCATCATAACTTTGTGAGTCTCAAACAGCCTCGCTGTGCGTTTGTGTCCTTGTAGTGTTGAACATTAATCCCATAAAACTGAATTCTCAAAAGAGTCAACATGCCAGTGTGATCTGCTGTGTGTTATGCTATGTAATGAGAAGAAAACAACTCTTTTAGGCTTGAAGCTGCCTGCTATAGTTAGTTAAGCTGTATGGGAGAATGCTGCTAACCGCACCACTGTTTGGTCTCTTAAGGAATATGATATACGAAGCCATTTCTGTTGAGATTGTCATAAAAATGTCTGAAAGACTCTTACAGGTGGACGCATGGCTTTAGTACGAGTCTTCATTTTTGATATCCATTGTTCTGTCATTATCAGCCCAGCCATGTAAGTCACAAGTTGGGTGAACATGCAGACTTCTTGGCGCATCACTCTTGCTGGACTGTCCTCCAAACATGCTGTGTATACTTCACTGGGTGCTATCTTTAAGCTGTGCTGTCCATTTGAGAATATGGTGCCTGAACACACCACCTGATATCACTGCAACTGcaatgtatttgtatgtgtgatGTTCTTGTGGTGTTCGCTTGCCTTGAATAAAATCACTAAAGCAGTGTCTTTCGTA
>XM_026923919.2
CCGGCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGGGCTGTTCAGACAGTGACAGACGTTCTGTTGTAAGTCTGTTCTAGTCagCCAGAGAAGCCCAGTGTGTCCCATTCCAAACCCAAAAAGACGACAAGCCATAGTAAAACAGCAAGTAAAGCTAAAGCAAGGCCGAA
>XM_034310369.1
GCCGGCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGtggtacATCCATCCATATTCTGTAcggcttatcctacacagggttgcggggagcctggagcctatcccagggatctcagggtacaaggtggggcacaccctggacagggtgccaatccactgcagggcacaatctGGAAATGCCAGTTAGCCCAAAACACAAATCTTTGGagtggggaggaaactggaatacacagaggaaacccctgaagcacaagaagcacatacacacacacacacacacacacacacacagaggcacacattatatgatgtcacatgaattaAGTCATGTTACTTCTATCAAGCAGTTTCACTGCAATGGCTTAGTGACAGTTTTTGATTTTCACTTATCAGGCCAGAAAAAAATCCTGCTGAATTATTTTGTCCTCTGACGTccaaaaattattaacaaaaattaaaaaagttcaATTGT
>XM_034310371.1
CCGGCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGGGCTGTTCAGACAGTGACAGACGTTCTGTTGTTTATATCTGACCGCCTGCACCCGCCTGCACATGACGCCAGAGAAGCCCAGTGTGTCCCATTCCAAACCCAAAAAGACGACAAGCCATAGTAAAACA
>XM_034310372.1
CGGCTGCAGGTGACGGGCGATTTTACGCAGCAATCGTCCACAGCCAGGCGGGGCTGCGCGCGCACTCATCAGGCCTTACAACAACTACATGGGGTTATTTCTGATGGAACAGGCTGTGGGTAAttagaccaaaaaaaataaatccttatGTACTGGAACATTACTGCAAGATTTCACTGAGGGAAATCCATCACAACAGGAAAAGTCGTTTAAAGAAGAAGAGTGGGAAAACCCCGATGCCTGATTTGTCCTGATTAGGAGTCGCTGCTGCAGGTCTTCAGCATGGCGTGGCCCTGCATCACCCGCGCCTGCTGCATCAACCGCTTCTGGAGCGAGCTGGATAAAGCGGACATCGCCGTGCCGCTCGTCTTTACCAAGTACTCGGAAGTGGCTGAGGTGCGGCACCTCCATCCGCAACCCCAACCGGGCCCGTTAGCGCAATCCCATCATCCCAGCGCGGTCGCCATAGAAACAGAGCCCGCCCACACCGCGCCTCAGGAGTCGgctgcagctgcagcagcatcTTCAGCCGCGCGCGGAGCGTCCGTCACGCGCCAGGACTTCAAAGCCTGGAGGGTCAAACCCGAACCGAGCTGCAAACCCAAAAACGAGTACCGCCCGTGCCAGACACCGTTCGATAACGAGACGCAGTACCGGAAAGATTATAAACCGTGGCCTGTTCAGAAGCGAGGAGATCACCCGTGGATCCCCAAAGTCGAGAGCAAGAGCCAGAAGCAGGAGCACGTGACCTCAGAACCGGACACGGGCGTGGAGAAGTGCGAGATCGAGGAGAGAgtcaaagaaaaagaagatgcaaaggaggagaagaagaagacacCTGGGAAGAAAGAGGAGGATGCTGAGActggagagaagaagaaagtgcAGAAAACTGGGTCCAGAGGAAGATCAGTAGCAGATGCTCTGAACAGGCAGATCAAGCAGGAGGGAACCTCTGGAAGCTCCTACAGGACGGAGTTCAAGGCGTACGCTGATGTAAAGCCGGTGAAACCCATCAAAGCCAAGTCACAGTACAAACTGGCGTTGGAGGAGAAGGCTAGTTTGGAGACGAGCTACAGTGCCACTTATAAAGGAGAGCAGGCAAAACCAGAGGCCACGGATAACAAACTGCTGGAGCGCCGCAGGATACGCAGCCTGTACAATGAGCCCAGCCTTAAAGAACCCAGCAAGGTTTATATCTGACCGCCTGCACCCGCCTGCACATGACGCCAGAGAAGCCCAGTGTGTCCCATTCCAAACCCAAAAAGACGACAAGCCATAGTAAAACAGCAAGTAAAGCTAAAG

Function

NR:

description
PREDICTED: microtubule-associated protein 6 homolog

GO: NA

KEGG:

id description
K10432 MAP6; microtubule-associated protein 6

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923918.2 True 2695 mRNA 0.46 3 7176567 7186260
XM_026923919.2 False 1327 mRNA 0.54 4 7177987 7186263
XM_034310369.1 False 1628 mRNA 0.52 3 7174352 7186264
XM_034310371.1 False 1320 mRNA 0.55 5 7178013 7186263
XM_034310372.1 False 1305 mRNA 0.54 4 7177997 7186262

Neighbor

gene id symbol gene type direction distance location
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding downstream 1604 7163957 ~ 7172748 (-)
phldb1b phldb1,LOC108277892 coding downstream 134492 6959123 ~ 7039860 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding downstream 238283 6931522 ~ 6936069 (-)
LOC113532633 pou2af1 coding downstream 285361 6883128 ~ 6888991 (-)
LOC113532877 LOC108277444 coding downstream 333381 6831234 ~ 6840971 (-)
thap12b thap12,LOC108278397 coding upstream 1536 7187800 ~ 7195208 (-)
trnap-cgg_8 NA coding upstream 9259 7195523 ~ 7195594 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding upstream 12567 7198831 ~ 7225546 (-)
alcamb LOC108278292 coding upstream 43654 7229918 ~ 7253606 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding upstream 90184 7276448 ~ 7283973 (-)
G221812 NA non-coding downstream 50150 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 300993 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 302373 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 304078 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 367985 6806155 ~ 6806367 (-)
G221844 NA non-coding upstream 32402 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 185106 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 390290 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 946099 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 976369 8162633 ~ 8162848 (-)
LOC113532805 NA other downstream 520934 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1149999 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1370379 5797928 ~ 5803973 (-)
G220990 NA other downstream 1463461 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1574977 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 206151 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1218565 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1754754 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2490995 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3121786 10308050 ~ 10312516 (-)

Expression


Co-expression Network