pipox (pipox)


Basic Information

Item Value
gene id pipox
gene name pipox
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10826289 ~ 10838128 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923928.2
GActgcactgagagtacactgcagcactttttaaacagcatttctttttcaaCATGGTGTACGAGTGTATTGTTATAGGCGCAGGGATTCAGGGCTCGTTTACCACCTACCACCTCGCCAAAAATAACAAGAACACTCTACTGCTGGAGCAATTTGTCCTGCCACACTCCCGAGGGAGCTCTCATGGCCAGACACGCATCATCCGGAAAGCTTATGAAGAAGACTTCTATACACACATGATGGAGGAGAGCTATGAGCTGTGGGCCCAGCTGGAAGAGGAGGCAGGATTGAAGctttacagGCGTACTGGCCTGCTGCTGATGGGTCCAGAGAACGGAAAGGACTTCCAGCTCATTAAGAACTCAGTGCAGAGGAACAAGGTTCCCACTGTGGTGCTGGAGAGACACGAGTTCAGCCAACACATCCCCAATGTGAACCTGACGAGCGGAGACGCTGCGATTGTGGAAACCACTGCTGGAGTTTTGTACGCAGACCGAGCACTCAGAGCAGCCCAGATGGTGTTCCAGTCacatggtggtgtgataaaagatggagagaaagtgaTTAACATTAAGCCTGGCGACTTAATCACAGTGACGACAGACTCTGGCACATACCAAGCAAAGAATCTGGTGATCACAGCTGGTCCCTGGGCCAAAACACTTCTCTCCCTCACTGGACTGCAGCTTCCACTGCAGGTGGTGAGGATAAATGTGTGCTACTGGAAGGAGAAGGTTCCAGGCTCCTACAGTATCAGTAATCGCTTCCCCTGCTTCATCCAAATGCAGCCAAAGGAGGCAGAGCATGATATCTATGGCCTCCCATCCAATGAATATCCAGGACTGATGAAGGTTTGCTACCACATGGGCAGTGAGACGGAGCcagatgagagagacagacagacagatagacggGACGTGGATGCCCTGTCCAGCTACATCAGCCGCTGCTTCCCCGGCCTTGTGCCTGTGCCTGCTGTTGTGGAGAGCTGTATGTACACGGTCACACCTGACAATAATTTTGTCCTGGACTGCCACCCAACCTACAGCAACATTGCTATTGGAGCTGGGTTCTCAGGCCACGGTTTCAAGTTTGCTCCAGTTGTAGGGAAGGTGCTGTGTGAGCTGAGCATGGGCCAGAATCCTTCCTATGACCTTTCACCTTTTAGCATCCAGCGCTTCCAGGACAACCCCAAATAAGATCCATGAGACCATTATCTTTAGTAGAACACATGTGAAGAAATTTCTATTAATGGAAGACACAACACTGATTTGTCAAGAATATACacatgatttttaataatttgttagTTTAGTTTGAGAGGGACAATGTTGGCAAATCAATAATACCTAAAATGTGAGTCATTTCAACGAAAATGCTTGTATCTCTAGATAATTTCTAAGAAATATACATTGCTAAATGCTCTGGCTAAATGA
>XM_026923929.2
TGTACGAGTGTATTGTTATAGGCGCAGGGATTCAGGGCTCGTTTACCACCTACCACCTCGCCAAAAATAACAAGAACACTCTACTGCTGGAGCAAGTTGTTTGTCCTGCCACACTCCCGAGGGAGCTCTCATGGCCAGACACGCATCATCCGGAAAGCTTATGAAGAAGACTTCTATACACACATGATGGAGGAGAGCTATGAGCTGTGGGCCCAGCTGGAAGAGGAGGCAGGATTGAAGctttacagGCGTACTGGCCTGCTGCTGATGGGTCCAGAGAACGGAAAGGACTTCCAGCTCATTAAGAACTCAGTGCAGAGGAACAAGGTTCCCACTGTGGTGCTGGAGAGACACGAGTTCAGCCAACACATCCCCAATGTGAACCTGACGAGCGGAGACGCTGCGATTGTGGAAACCACTGCTGGAGTTTTGTACGCAGACCGAGCACTCAGAGCAGCCCAGATGGTGTTCCAGTCacatggtggtgtgataaaagatggagagaaagtgaTTAACATTAAGCCTGGCGACTTAATCACAGTGACGACAGACTCTGGCACATACCAAGCAAAGAATCTGGTGATCACAGCTGGTCCCTGGGCCAAAACACTTCTCTCCCTCACTGGACTGCAGCTTCCACTGCAGGTGGTGAGGATAAATGTGTGCTACTGGAAGGAGAAGGTTCCAGGCTCCTACAGTATCAGTAATCGCTTCCCCTGCTTCATCCAAATGCAGCCAAAGGAGGCAGAGCATGATATCTATGGCCTCCCATCCAATGAATATCCAGGACTGATGAAGGTTTGCTACCACATGGGCAGTGAGACGGAGCcagatgagagagacagacagacagatagacggGACGTGGATGCCCTGTCCAGCTACATCAGCCGCTGCTTCCCCGGCCTTGTGCCTGTGCCTGCTGTTGTGGAGAGCTGTATGTACACGGTCACACCTGACAATAATTTTGTCCTGGACTGCCACCCAACCTACAGCAACATTGCTATTGGAGCTGGGTTCTCAGGCCACGGTTTCAAGTTTGCTCCAGTTGTAGGGAAGGTGCTGTGTGAGCTGAGCATGGGCCAGAATCCTTCCTATGACCTTTCACCTTTTAGCATCCAGCGCTTCCAGGACAACCCCAAATAAGATCCATGAGACCATTATCTTTAGTAGAACACATGTGAAGAAATTTCTATTAATGGAAGACACAACACTGATTTGTCAAGAATATACacatgatttttaataatttgttagTTTAGTTTGAGAGGGACAATGTTGGCAAATCAATAATACCTAAAATGTGAGTCATTTCAACGAAAATGCTTGTATCTCTAGATAATTTCTAAGAAATATACATTGCTAAATGCTCTGGCTAAATGA

Function

symbol description
pipox Predicted to enable L-pipecolate oxidase activity and sarcosine oxidase activity. Predicted to be involved in L-lysine catabolic process to acetyl-CoA via L-pipecolate. Predicted to be active in peroxisome. Orthologous to human PIPOX (pipecolic acid and sarcosine oxidase).

NR:

description
peroxisomal sarcosine oxidase

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K00306 PIPOX; sarcosine oxidase / L-pipecolate oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923928.2 True 1436 mRNA 0.48 8 10826289 10838128
XM_026923929.2 False 1383 mRNA 0.48 8 10826289 10838071

Neighbor

gene id symbol gene type direction distance location
usp32 usp32,LOC108425843 coding downstream 133018 10651351 ~ 10693271 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding downstream 175079 10642238 ~ 10651210 (-)
tmem97 tmem97 coding downstream 185256 10639861 ~ 10641033 (-)
rad1 rad1,LOC107601739 coding downstream 190464 10632864 ~ 10635825 (-)
bbc3 NA coding downstream 203152 10613646 ~ 10623137 (-)
gemin4 gemin4 coding upstream 179024 11017152 ~ 11023330 (-)
tmem199 tmem199,LOC107592604 coding upstream 226473 11064601 ~ 11068228 (-)
trarg1a tusc5 coding upstream 335874 11174002 ~ 11185519 (-)
abhd15a LOC108278383 coding upstream 397512 11235640 ~ 11243992 (-)
exo5 exo5 coding upstream 435635 11273763 ~ 11279974 (-)
G223855 LOC108277744 non-coding downstream 64556 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 189495 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 214441 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 413609 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 662917 10161783 ~ 10163372 (-)
G224086 NA non-coding upstream 231556 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 267443 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 556592 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 585433 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 586501 11424629 ~ 11424859 (-)
appbp2 appbp2 other downstream 104956 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 513773 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1113230 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1879390 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2347377 8404829 ~ 8478912 (-)
aipl1 aipl1,LOC106612843 other upstream 350122 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1550738 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1597078 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2082835 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 2102782 12940910 ~ 13007559 (-)

Expression


Co-expression Network