thap12b (thap12,LOC108278397)


Basic Information

Item Value
gene id thap12b
gene name thap12,LOC108278397
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7187800 ~ 7195208 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923930.2
GAAGCTGTAGCATTATGGGTCGTGTGTCGAAATGCATTCTGGGACAGCAGTTCCGTGCTTTGTTAGctgcttagctagctagctgtgcaGTAGCTGTGCGCTGATATAGAGGGAAAATACAACCCTGTTCAGTTTTAATACACTTAAAATAATGCTTGGACTGTAAACAGTAAGAGGTTATTTATACTAGTTTCATAAACAATGCCAAATTTTTGCGCGGCTCCAAACTGCACCCGGAAAAGCACTCAGTCTGATCTGGCTTTCTTTAGGTTTCCCAGAGACCCTGAGAGATGTAGGCTGTGGGTAGAGAACTGTCGCCGTGCAGATCTCGAAGAGAAAACTCCTGATCAGCTAAACAAACATTACAGACTATGTGCGAAGCACTTTGAGCCAGCAATGATTTGTAAAACGAGCCCTTACAGGACTGTGCTGAGAGATACTGCTATTCCTACCATTTTTGATTTAACCAGCCACCTCAGTAATCCACACAGCAGACATCGGAAACGCATCAAGATTTTGaccGATGAAGAAGTACGAAAAATCAAAGAGCGAAGATtgGAGTCTTCAATAGAACAGTTTCtctcaaaaaaggaaaaaactgcTGGTGAGGATGACGCAGAGGTTGATGATGTACCCCAGTTGACTGCTCATCAGAAAGAGCTAAGAGAGTTCTTAAGGTCTTTGTTTGAAGTGATTGTTTTAATAGGAAAACAAAACATCCCATTGAGTTACCAGTCAAAAGACGAGCCGTTTGTCATGAGCACATTCCAGGCTTTGCTGGAAAACCGCATTAATGCTGGCGATGAAGTTCTTAGAGCACGGTTTGAAACAGCAGCTGTTAATGAGGAATTTTGGCCAGGAGCACAGCAGAAGCAGCTGctggatgtgtgtgagagatgcgTTCGCGATGAGCTTCTGCAGGAAGTACGAGAGAGCCGTTTCTTTTCGCTGGTGACTGGGGAGCTGGTGGAATTTCCAGAAGGTCAGCACATCCCAGTGTACTTGCGTTTTGTGGACCAAAGTAACACTCTCAGGGAGGAGTTTGTAGAGTTCCTCTCGTTTGACGGAGACGAGCAGTCTATGGCAGACAAATTGGAGTCTCACATCATGAAGGAATGGGATCTGAGCATGGAGCACTGCAGAAGTCAAGCACATGCAGGTTCTGGTGTCTTTGGCAGTAAGATGAAAGCCATAGCCAACCAGCTTATGGAGAAATACCCAATGGCCATGAACACACCATGTGCAACCTATGCACTTAACGTACATCTAGCTAACAGTATTCCGCTGACTGGTGTTCAAGTCGTGATGTCGGTTCTTAAAAAGACAGATGCCTTCTTTAAGTCTTCTCCACTTCTGCAGGCTGAACTAGACAGCGCCATCTCCATACTCTCTCAAGGCAACATAGAGAAAGGAGACGATCTCAAAGAGACCTGTCGTGCCACCTGGACAGAGCTGCATAATGTGTTTGAGATGGCTGTTGATTTGTTAGAGCCACTTCTGCTCTGCATGGACAGCATACATGACAACGAAGACTTGAAATGGAATGACCAATTCACTAGCGATGCATATGCCATCTCGGAGGCTTTGGCTGACTTTGAGTTTGTCGTTACTCTGGTCGTAATGAAGAATGCTCTCTCGTTCACAAGAGCCTTTGGTAAAAACTTGCAAGGAGAGACTCTTGATGTGTATTTTGCGGCCAGCAGCCTCACGGCCGTCTTGCATTCTTTGCATGAGGTTCTGGACAACATTGAAGTTTACCATGAATTCTGGTTTGAGGAAGCTGTAAATCTGGCCACAGCGATGGAGATCCCAGTCAAAGTGCCCAGACTGTTCCTCAGAAAGCAACGGGCGATGGAAACAGTAGAAATACAGGCTGAGTACTTTTACAAAGAATACTTAACTCTTCCGCTCATGGAGCACATCACTCAGGAAGTGAAGGACATGTTTTCGGATAACCATATCAGGGCTCTTAAGTGCCTGTCTCTTGTTCCAGCAGTCATGGGCCAGATGAAATTTAACACGTCGGAGGAAGCCCATGCGGACATATTCAGGAGCGATCTTCCTCAGCCAGACACACTGCCTGCAGAGCTTCACTGCTGGAGGATCAAATGGAAACACAGGGGAAAGGAAGTCAACCTGCCATGCACCATTCATGAAACATTGCAGCACTCAGACGTCAAGTTCTTCCCAAACGTCAATGCATTCCTGAGAATTCTGGCCTCTTTACCTGTGTTGACGTTTGGGGGCCAGGGATGCACTGGACAGAAACGCCTACAGGCTTACCTTTCAGACACACCAGTGAGGCACAGGTCAAAGAGTTTGGCTGTGCTAAATATCAATTATCATGTTAAAATAGATCTAGATGAAATGGTTGAATGTTACATCAAAAGTTACCCAGAAgaagaaagtgattaaatgaaCAGTGGCCTTTACAGAGACTTAACAGTGAAAGACTTCTCTGAATCACACTGTGGTTATGAGCATAGGGtagattaaattatttatatttttctaactGGTGTATATAATTTGACATTTTGCAGGCTTAATATTTTGTGTCCAGTAGTCATTACAgtgttaaatgtatttatactgtTTTATCTTATAAAGACCGTATGAGCCTAAATGCATTTAATCAAATGGGTATAAATTAGTGTGTAAAAAATTTTACCTGTGTGAAACTGGACTAATATGTGAGAGTGAAAAAGTTAACAGTCTGAAACATGACAAATGTtgcattgtttttaaatctgtacttcatttacagtgtaaataaatgtgactgATTTTTAATATGG

Function

symbol description
thap12 Predicted to enable DNA binding activity; metal ion binding activity; and protein dimerization activity. Predicted to be involved in negative regulation of cell population proliferation and signal transduction. Predicted to be located in nucleus.

NR:

description
PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923930.2 True 2798 mRNA 0.43 5 7187800 7195208

Neighbor

gene id symbol gene type direction distance location
map6b LOC108277516 coding downstream 1536 7174352 ~ 7186264 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding downstream 15052 7163957 ~ 7172748 (-)
phldb1b phldb1,LOC108277892 coding downstream 147940 6959123 ~ 7039860 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding downstream 251731 6931522 ~ 6936069 (-)
LOC113532633 pou2af1 coding downstream 298809 6883128 ~ 6888991 (-)
trnap-cgg_8 NA coding upstream 315 7195523 ~ 7195594 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding upstream 3623 7198831 ~ 7225546 (-)
alcamb LOC108278292 coding upstream 34710 7229918 ~ 7253606 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding upstream 81240 7276448 ~ 7283973 (-)
LOC113532840 LOC108277937 coding upstream 159972 7355180 ~ 7365143 (-)
G221814 NA non-coding downstream 9504 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 63598 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 314441 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 315821 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 317526 6867784 ~ 6870274 (-)
G221844 NA non-coding upstream 23458 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 176162 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 381346 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 937155 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 967425 8162633 ~ 8162848 (-)
LOC113532805 NA other downstream 534382 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1163447 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1383827 5797928 ~ 5803973 (-)
G220990 NA other downstream 1476909 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1588425 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 197207 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1209621 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1745810 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2482051 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3112842 10308050 ~ 10312516 (-)

Expression


Co-expression Network