rad1 (rad1,LOC107601739)


Basic Information

Item Value
gene id rad1
gene name rad1,LOC107601739
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 10632864 ~ 10635825 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923988.2
cagtaatgCGGTGTGCCAACTGGCAAAAAtgtcaaagaagaagaaaatgagcgGTGAAGAAGAAGAGTAAAGGCATTAGcgccaaaagtgttttattatacaaaccttgtatgtaatatttgtatGTACCTGTGTTAAGTAGATGCTTGATGGTTGAGAAGTATGCCTCTGTCAACTCAGCCGCAATCAGGAAATGATGAGTATGTCCTGGTAGCTAGTCTGGATAATGTGAGGAACCTTTCCAACATCCTGAAAGCGATATCCTTCAAAGACCACGCAATATTTAATGCAACTCAAAACGGACTAAAAGTTACTGTAGAAGAGTCCAAATGTCTTCAAGCAAATGCGTTCATTCAGgcgGAGATATTTCAAGAATTCACCCTGAAGGAGGATGTGGTTGGGTTTCAGGTGAACCTCACAGTGCTGCTGGATTGCCTCACCATCTTTGGGGGAAGCACAGTGCCAGGAGTGAGCACAGCTCTGAGAATGTGCTACAATGGCTATGGCTACCCGTTAACCCTGTTCCTGGAGGAGGGAGGAGTGGTAACTGTTTGCAAGATTAACACCCAGGAGCCAGAGGAGCCTTTAGATTTTGATTTCTGCAGCACCAATGTCACCAACAAGGTGATCCTTCAGTCAGACAGCCTGAAAGAGGCATTTTCAGAGCTGGACATGACCAGTGAGATCCTGCAGTTAACAATGTCACCAAGTCATCCCTATTTCAGGCTGTCTACATTTGGAAATTCAGGAAATGCTCATTATGACTACCCCAAAGACTCAGACATGATGGAACTGTTCCAGTGCACTAAGACACAGACCAACAGGTATAAGATGTCACTATTAAAACCCTCCACTAAGGCACTGGCTCTGTCCTGCAAGGTGTCTGTGAGAACAGATACTCGAGGTTTCCTCTCATTACAGTATCTTGTACGGAATGATGATGGACAGATTTGTTTTGTTGAATATTATTGCAGTCCCGACGAAGAGGTTGATGAAGAATAGAGGAACATGAAGGACCATATGTGGTCCTTGTTAAAACTGGGCTTTTTTCTCTGTCCATGTGGAACCGAGATGCTACAGATGGAGTTGTTCATTGTGTTGATTTTCAGGGCCACCATTTTTAAGGGTTCTGTGGTTTGTTGTATGttgttgtatattgtatatttgatATGGCTATAACTTACTGTGTAATATTACAAgcaatattttgtaatttagtactatatgaataaataatgacaattaTTCATTCA

Function

symbol description
rad1 Predicted to enable 3'-5' exonuclease activity. Predicted to be involved in DNA damage checkpoint signaling and DNA repair. Predicted to act upstream of or within cellular response to DNA damage stimulus. Predicted to be located in nucleus. Predicted to be part of checkpoint clamp complex. Orthologous to human RAD1 (RAD1 checkpoint DNA exonuclease).

NR:

description
cell cycle checkpoint protein RAD1

GO:

id name namespace
GO:0000077 DNA damage checkpoint biological_process
GO:0000738 DNA catabolic process, exonucleolytic biological_process
GO:0006281 DNA repair biological_process
GO:0005634 nucleus cellular_component
GO:0008853 exodeoxyribonuclease III activity molecular_function

KEGG:

id description
K02830 HRAD1, RAD17; cell cycle checkpoint protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923988.2 True 1253 mRNA 0.42 6 10632864 10635825

Neighbor

gene id symbol gene type direction distance location
bbc3 NA coding downstream 9727 10613646 ~ 10623137 (-)
zc3h4 zc3h4,LOC107601737,LOC107743691,LOC106580865 coding downstream 36153 10584839 ~ 10596711 (-)
zgc:154093 LOC108278387 coding downstream 58545 10572635 ~ 10574319 (-)
ercc2 ercc2,LOC107743694,LOC107601732 coding downstream 62688 10560557 ~ 10570176 (-)
ckmb ckm,ckmb,LOC107690449,LOC107601735 coding downstream 89948 10539569 ~ 10542916 (-)
tmem97 tmem97 coding upstream 4036 10639861 ~ 10641033 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding upstream 6413 10642238 ~ 10651210 (-)
usp32 usp32,LOC108425843 coding upstream 15526 10651351 ~ 10693271 (-)
pipox pipox coding upstream 190464 10826289 ~ 10838128 (-)
gemin4 gemin4 coding upstream 381327 11017152 ~ 11023330 (-)
G223808 NA non-coding downstream 21016 10560426 ~ 10611848 (-)
G223766 NA non-coding downstream 220184 10412456 ~ 10412680 (-)
G223676 NA non-coding downstream 469492 10161783 ~ 10163372 (-)
G223449 NA non-coding downstream 531698 10100959 ~ 10101166 (-)
G223443 aldh3a2a,aldh3a1,LOC108277490,LOC107657568,LOC105897199 non-coding downstream 542874 10089643 ~ 10089990 (-)
G223827 NA non-coding upstream 331 10636156 ~ 10636794 (-)
G223855 LOC108277744 non-coding upstream 120673 10756498 ~ 10761733 (-)
G224086 NA non-coding upstream 433859 11069684 ~ 11069958 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding upstream 469746 11105571 ~ 11168668 (-)
G224358 NA non-coding upstream 758895 11394720 ~ 11397828 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 320348 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 919805 9677259 ~ 9713059 (-)
G222809 oaf other downstream 1685965 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2153952 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 3169365 7392415 ~ 7463499 (-)
appbp2 appbp2 other upstream 72427 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 552425 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1753041 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1799381 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 2285138 12920963 ~ 12999031 (-)

Expression


Co-expression Network