laynb (LOC108277700)


Basic Information

Item Value
gene id laynb
gene name LOC108277700
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 8615437 ~ 8630154 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026923991.2
TCTCGTGCTGGTGTGCAACATCTGGCACACTTCTCACACAGTGCACACTATGTAGTGCTCTAGTATGCAGTGTGGGACATGAGGAGGATTGGAGGACTTTCTGCACCGCcacactcttcactcttcacTCTTTCTGCTTATCTGACAGCGCGACGTTTTCCTGGAGCTTTGGACACGACAGACTGTTGAAGTGCACTCCAGCATTGATGTAAATGAATATGTGGAGATGGATTTCATGAAGCTGATCGGAACTGTTTTGGCTGTTTGTTGTCATCCAGGCTGCGCACTAAAAGGCTTCTCCAGTCAGCGCATATGCCGTCGGGGTACGGAGAGGCCGTGCTATAAGATTGCTTACCACCAGGACAGTGGGTACGGGGTGAGCTTTGAGGAGGCCAGGCGGACGTGCAGGGAAGACGACGGTGAGCTGCTCAGTATTGAAACAGAAAGCGAGCAGAGGCTAATGGAGATGTTTGTTCGAGACGCGCCAGGCGCTAAAGGTGACTTCTGGATTGGACTGCGAAGGAATCAAGGTTACAAAGAGTCAGCGGCTGCAGAGTGCTCATCACAGTATTACTGGCTGGATCACAGCCAGGCTACCTACAGGAACTGGCTGTTGAAAGAACCCTCGTGTGGTTTTGACCAGTGTGTGGCCCTGCACTACAGACCCAATGCGCCTGCTTCTCTCAAGGGACGCAATATGTTCAAGTGGAGTGATATCAGATGCAACAGCAAAAATAACTTCATATGCAAATATGCAGAAGAAATAGCTCCGGTTCCTACTCCTGTTGGAAATTCCACTGCTCGCTCAgtgtCTCTTTCAGATGAAGGCATCAATGTCTCCTACATCCTCCTGGCTACTGTACCTGTACTGCTTCTGATTATACTGGTGGTCTCTGGGGTCTTCTGTTATAGAGTCATGGCTAGGAAGAGAAAGGAACAAAATGACATCTACGCTGTGCCTGGTCAATGGGTGTCTACTAGTGGGCTGAAAAACAGCAGTAGCCCAGTCCCCAAGGATGGTCCCAGCCGGAATGGGGCCCAGCTAGAATACATGAGCTCAGAAATCAGCAGAACATTCAGTGCAACGGACTATGAGAATGTTCCGAGCAATACTGCTGGTTTTGTCACGAATGAAATCTACGAGGCATGTCGCACTCCGGCCACCATGGAGGCAGGATGGGTGGATAATGACATTTATGGATACTGAACCTGTCCAGTGATGGGACAAAAATTTAATGACTTCTAACCCACCTGGCTCGAATTCATCTCAGCTTCTTCAGTGTCTGTGCTTGGACTTTAATGCAATCTGTATTAACCCAATGTGAAGGACATGGGATCCTGTGAATGCTCATCCCCCAAGGTGGACAGTAAGCCCACTTCTCTGAAATGGACAgtacaaagaaacacaaaggtGTCATCACCTCATAGCCACTTCCTCTGTGCACGCCGGTGTCCGGGAAGAAGACAGCGCACACGGAAACTTACACAATAATGCCCTGACCTTTCTGCCCATCTGAACAACGTCCTGTCCTGTATCTCCTGTTGAGGTCCACTTTGTTTTTCAGACACTGTTAATTCTGCAGTGGCATACCAGTTCAAAGGCAAAATAATGGCAGTTTTGCTTAGCTCGGATATTTTAAGGTGCTAAAAAATCCTGTTTCCAAAAGCATAAAACTGTCAatgtttcattcttttcctGTTGTGCTTAAAATTATACTGAATGAAATATCATCAAAAATATCTCATAACAGTTTCATTACAAATAAGATAAGGATTTCCGGATTTCAGGATTTACGCATATGTGGAAATATATCCTGTTGGTTATGTTTAATACCTGTTACACTATGATTGATCTTTTCCTTCCAAAATTCCTTATAACTGTTGGCCGTATGATATGAGCTTACAAGAAGTCAGTTATCATCCATtctggatagtgtttacagtaagGTTTTAACAAGACAGCATTGTCAACATTTTGCACCTTGCTAGGACTCAGTTAATATTTGCAGCTAAACGTACGGCAAGCTTTTAATGATGAACTTTTACATATACATAGCTCTCTTCATACAGGCTGACTGTATAGTAATCAGTacattattgtatatttatataacaccaAACATGCTATAAGCATATGTGTTGAATGCCATCatagcattttatttaagtttaCCTTATGACTAATAAACAAGTTATTGGTGCA
>XM_026923992.2
GGTTCTCGTGCTGGTGTGCAACATCTGGCACACTTCTCACACAGTGCACACTATGTAGTGCTCTAGTATGCAGTGTGGGACATGAGGAGGATTGGAGGACTTTCTGCACCGCcacactcttcactcttcacTCTTTCTGCTTATCTGACAGCGCGACGTTTTCCTGGAGCTTTGGACACGACAGACTGTTGAAGTGCACTCCAGCATTGATGTAAATGAATATGTGGAGATGGATTTCATGAAGCTGATCGGAACTGTTTTGGCTGTTTGTTGTCATCCAGGCTGCGCACTAAAAGGCTTCTCCAGTCAGCGCATATGCCGTCGGGGTACGGAGAGGCCGTGCTATAAGATTGCTTACCACCAGGACAGTGGGTACGGGGTGAGCTTTGAGGAGGCCAGGCGGACGTGCAGGGAAGACGACGGTGAGCTGCTCAGTATTGAAACAGAAAGCGAGCAGAGGCTAATGGAGATGTTTGTTCGAGACGCGCCAGGCGCTAAAGGTGACTTCTGGATTGGACTGCGAAGGAATCAAGGTTACAAAGAGTCAGCGGCTGCAGAGTGCTCATCACAGTATTACTGGCTGGATCACAGCCAGGCTACCTACAGGAACTGGCTGTTGAAAGAACCCTCGTGTGGTTTTGACCAGTGTGTGGCCCTGCACTACAGACCCAATGCGCCTGCTTCTCTCAAGGGACGCAATATGTTCAAGTGGAGTGATATCAGATGCAACAGCAAAAATAACTTCATATGCAAATATGCAGAAGAAATAGCTCCGGTTCCTACTCCTGTTGGAAATTCCACTGCTCGCTCAgATGAAGGCATCAATGTCTCCTACATCCTCCTGGCTACTGTACCTGTACTGCTTCTGATTATACTGGTGGTCTCTGGGGTCTTCTGTTATAGAGTCATGGCTAGGAAGAGAAAGGAACAAAATGACATCTACGCTGTGCCTGGTCAATGGGTGTCTACTAGTGGGCTGAAAAACAGCAGTAGCCCAGTCCCCAAGGATGGTCCCAGCCGGAATGGGGCCCAGCTAGAATACATGAGCTCAGAAATCAGCAGAACATTCAGTGCAACGGACTATGAGAATGTTCCGAGCAATACTGCTGGTTTTGTCACGAATGAAATCTACGAGGCATGTCGCACTCCGGCCACCATGGAGGCAGGATGGGTGGATAATGACATTTATGGATACTGAACCTGTCCAGTGATGGGACAAAAATTTAATGACTTCTAACCCACCTGGCTCGAATTCATCTCAGCTTCTTCAGTGTCTGTGCTTGGACTTTAATGCAATCTGTATTAACCCAATGTGAAGGACATGGGATCCTGTGAATGCTCATCCCCCAAGGTGGACAGTAAGCCCACTTCTCTGAAATGGACAgtacaaagaaacacaaaggtGTCATCACCTCATAGCCACTTCCTCTGTGCACGCCGGTGTCCGGGAAGAAGACAGCGCACACGGAAACTTACACAATAATGCCCTGACCTTTCTGCCCATCTGAACAACGTCCTGTCCTGTATCTCCTGTTGAGGTCCACTTTGTTTTTCAGACACTGTTAATTCTGCAGTGGCATACCAGTTCAAAGGCAAAATAATGGCAGTTTTGCTTAGCTCGGATATTTTAAGGTGCTAAAAAATCCTGTTTCCAAAAGCATAAAACTGTCAatgtttcattcttttcctGTTGTGCTTAAAATTATACTGAATGAAATATCATCAAAAATATCTCATAACAGTTTCATTACAAATAAGATAAGGATTTCCGGATTTCAGGATTTACGCATATGTGGAAATATATCCTGTTGGTTATGTTTAATACCTGTTACACTATGATTGATCTTTTCCTTCCAAAATTCCTTATAACTGTTGGCCGTATGATATGAGCTTACAAGAAGTCAGTTATCATCCATtctggatagtgtttacagtaagGTTTTAACAAGACAGCATTGTCAACATTTTGCACCTTGCTAGGACTCAGTTAATATTTGCAGCTAAACGTACGGCAAGCTTTTAATGATGAACTTTTACATATACATAGCTCTCTTCATACAGGCTGACTGTATAGTAATCAGTacattattgtatatttatataacaccaAACATGCTATAAGCATATGTGTTGAATGCCATCatagcattttatttaagtttaCCTTATGACTAATAAACAAGTTATTGGTGCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026923991.2 True 2203 mRNA 0.44 6 8615437 8630151
XM_026923992.2 False 2194 mRNA 0.44 6 8615437 8630154

Neighbor

gene id symbol gene type direction distance location
sik2b LOC108277697,LOC108436519,LOC107657230 coding downstream 2013 8563170 ~ 8613424 (-)
il4i1 il4i1 coding downstream 103235 8502694 ~ 8512202 (-)
sdhdb sdhd,LOC107709126,LOC107670952,LOC107657257,LOC107586238,LOC107601715 coding downstream 116968 8491788 ~ 8498469 (-)
dixdc1a dixdc1 coding downstream 403365 8203662 ~ 8212072 (-)
LOC113532837 LOC108277602 coding downstream 478228 8122414 ~ 8137209 (-)
zgc:162608 LOC108277432 coding upstream 15489 8645643 ~ 8647238 (-)
drd2a drd2,LOC107586233,LOC107670954,LOC107717269,LOC107709110 coding upstream 99788 8729942 ~ 8772841 (-)
scn3b scn3b coding upstream 144992 8775146 ~ 8796028 (-)
LOC113532830 LOC108277452,LOC107578747 coding upstream 169313 8799467 ~ 8814548 (-)
mcamb mcam coding upstream 902896 9533050 ~ 9567354 (-)
G222610 ppp2r1b,LOC108277698,LOC104918016,LOC106612458 non-coding downstream 67063 8544912 ~ 8548374 (-)
G222591 NA non-coding downstream 124153 8464576 ~ 8491284 (-)
G222522 NA non-coding downstream 373261 8241064 ~ 8242176 (-)
G222391 NA non-coding downstream 418230 8196805 ~ 8197207 (-)
G222377 NA non-coding downstream 452589 8162633 ~ 8162848 (-)
G222852 NA non-coding upstream 407326 9037480 ~ 9043751 (-)
LOC117599042 NA non-coding upstream 1128004 9758158 ~ 9758966 (-)
LOC117599044 NA non-coding upstream 1172338 9802492 ~ 9806509 (-)
LOC117599021 NA non-coding upstream 1256862 9887016 ~ 9895761 (-)
G223353 NA non-coding upstream 1301202 9931356 ~ 9978560 (-)
sorl1 sorl1,LOC107717255 other downstream 136525 8404829 ~ 8478912 (-)
zgc:77784 LOC108277423 other downstream 1151938 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 1962019 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 2591084 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 2811464 5797928 ~ 5803973 (-)
G222809 oaf other upstream 310864 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 1047105 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 1677896 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 2078098 10708252 ~ 10721333 (-)
aipl1 aipl1,LOC106612843 other upstream 2558096 11188250 ~ 11220656 (-)

Expression


Co-expression Network