aldoca (aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247)


Basic Information

Item Value
gene id aldoca
gene name aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6029246 ~ 6033511 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924004.2
CCGCCCTACAGGTTCCAGCCTCCTCCGGGACGCCACCATAAAGAACTGGGACAATGTTGCTGTCACAAAAAGAGCTTCTCATTTCATTCCTCATCACATCTGCGGAGCAAGCCAACGCATCTGCATCTCTTCTCGGACTTGGTTGTGATCCCTCTGTAAGATGACCCACCAGTTTCCGACCCTCACCACGGAGCAGAAGAAGGAGCTGCATGAGATCGCTCTGCGCATCGTGGCTCCTGGGAAAGGCATTCTAGCAGCTGATGAATCAGTTGGCAGCATGGGAAAGCGTCTGAATCAGATAGGAGTGGAGAACACAGAGGAGAATCGTCGCCTGTATCGCCAAGTCCTCTTCAGCGCAGATGACCGCATTGACAGCTGCATCGGCGGAgtaatttttttccatgaaaCCCTCTACCAGACTTCAGATGATGGTGTTCCTTTTGTTAAAATGATCAAAGACAAAGGGATCACTATTGGCATCAAGgTTGACAAAGGAGTAGTTCCCCTGCCAGGAACTAATGGAGAAACAACTACACAAGGGCTGGATGGTCTGTCAGAGAGATGCGCTCAGTACAAGAAAGATGGAGCAGATTTTGCCAAGTGGCGCTGTGTGATGAAGATCAGTGACACGGCTCCATCTCCGCTGTGCATCACAGAAAATGCAAATGTCCTTGCACGCTATGCTACTATCTGCCAGCAGcaTGGGATTGTACCCATAGTGGAACCTGAGATCCTACCTGATGGAGATCATGACCTCAAGCGCTGCCAGTTTGTTACAGAGAGGGTTTTGGCAGCAGTGTACAAGGCCATGTTTGATCATCATGTGTATCTGGAGGGCACCCTGCTCAAGCCCAACATGGTGACCCCTGGACATGGATGCCCCACCAAATACAGTGCCGAGGAGGTTGCCATGGCGACCGTCACTGCTCTACGTCGCACCGTGCCTCCTGCAGTCACTGGAATAACTTTTCTCTCCGGAGGCCAGAGTGAAGAGGAGGCCTCTGTCCACTTAAATGCCATCAATAACTGCCCGCTGGTAAAGCCCTGGGCACTGACCTTTTCTTTTGGTCGGGCGCTGCAGGCCTCAGCACTGAAGACCTGGCGTGGTCAGAAAGAAAACCAGAGTGCTGCCACTGAGGAGTTCATCAAACGTGCTGAGATCAACAGTCTGGCATCCCAGGGGAAGTATTCTGGTGGAGGGGACAGCAGTGGAGCTACTGGGCTTTCCCATTACCTGTCTAGCTATGCATACTGAAATGCTACCTTTACCTGCTGCCTATGATTATTCAGAATCTCCTCAGATACAGCCAATTCCACTTCCACTGTTGTAGAAACGACTGTACTctgatacacatacacaacttCGAGGTGTATCTTGGGTTCAGTACGTAGCTGTTTGGACTAAATCAGTATTAGAGCTgttgaaattaattaaacaactCAAACACTGTTCATAAAACCTTATAAATGATTATGAATACCATATAGATAAATGTGATCTAGTGATCTTGTCACTCAGCCAACACAATTTGGGTTTCTCTTTACAGCTTGTGCTGTGCAGTGCttgatgaaaacatgatttaaacGTCTGTGTGTAATGGATAGAAATAAGCTTATTTACACTTAGTACCTGTGAGCTGTGTGCTTTTGGTGAGTGTTGTGGTATTCTGTGTGACTAGATAAATGTGATCAGAAAATACTGCATAAGATGTAATAAATTCTGAAAATATT
>XM_026924005.2
TGTCACAAAAAGAGCTTCTCATTTCATTCCTCATCACATCTGCGGAGCAAGCCAACGCATCTGCATCTCTTCTCGGACTTGTCAGCCTACCGTTCTCAGGTTGTGATCCCTCTGTAAGATGACCCACCAGTTTCCGACCCTCACCACGGAGCAGAAGAAGGAGCTGCATGAGATCGCTCTGCGCATCGTGGCTCCTGGGAAAGGCATTCTAGCAGCTGATGAATCAGTTGGCAGCATGGGAAAGCGTCTGAATCAGATAGGAGTGGAGAACACAGAGGAGAATCGTCGCCTGTATCGCCAAGTCCTCTTCAGCGCAGATGACCGCATTGACAGCTGCATCGGCGGAgtaatttttttccatgaaaCCCTCTACCAGACTTCAGATGATGGTGTTCCTTTTGTTAAAATGATCAAAGACAAAGGGATCACTATTGGCATCAAGgTTGACAAAGGAGTAGTTCCCCTGCCAGGAACTAATGGAGAAACAACTACACAAGGGCTGGATGGTCTGTCAGAGAGATGCGCTCAGTACAAGAAAGATGGAGCAGATTTTGCCAAGTGGCGCTGTGTGATGAAGATCAGTGACACGGCTCCATCTCCGCTGTGCATCACAGAAAATGCAAATGTCCTTGCACGCTATGCTACTATCTGCCAGCAGcaTGGGATTGTACCCATAGTGGAACCTGAGATCCTACCTGATGGAGATCATGACCTCAAGCGCTGCCAGTTTGTTACAGAGAGGGTTTTGGCAGCAGTGTACAAGGCCATGTTTGATCATCATGTGTATCTGGAGGGCACCCTGCTCAAGCCCAACATGGTGACCCCTGGACATGGATGCCCCACCAAATACAGTGCCGAGGAGGTTGCCATGGCGACCGTCACTGCTCTACGTCGCACCGTGCCTCCTGCAGTCACTGGAATAACTTTTCTCTCCGGAGGCCAGAGTGAAGAGGAGGCCTCTGTCCACTTAAATGCCATCAATAACTGCCCGCTGGTAAAGCCCTGGGCACTGACCTTTTCTTTTGGTCGGGCGCTGCAGGCCTCAGCACTGAAGACCTGGCGTGGTCAGAAAGAAAACCAGAGTGCTGCCACTGAGGAGTTCATCAAACGTGCTGAGATCAACAGTCTGGCATCCCAGGGGAAGTATTCTGGTGGAGGGGACAGCAGTGGAGCTACTGGGCTTTCCCATTACCTGTCTAGCTATGCATACTGAAATGCTACCTTTACCTGCTGCCTATGATTATTCAGAATCTCCTCAGATACAGCCAATTCCACTTCCACTGTTGTAGAAACGACTGTACTctgatacacatacacaacttCGAGGTGTATCTTGGGTTCAGTACGTAGCTGTTTGGACTAAATCAGTATTAGAGCTgttgaaattaattaaacaactCAAACACTGTTCATAAAACCTTATAAATGATTATGAATACCATATAGATAAATGTGATCTAGTGATCTTGTCACTCAGCCAACACAATTTGGGTTTCTCTTTACAGCTTGTGCTGTGCAGTGCttgatgaaaacatgatttaaacGTCTGTGTGTAATGGATAGAAATAAGCTTATTTACACTTAGTACCTGTGAGCTGTGTGCTTTTGGTGAGTGTTGTGGTATTCTGTGTGACTAGATAAATGTGATCAGAAAATACTGCATAAGATGTAATAAATTCTGAAAATATT

Function

symbol description
aldoca Predicted to enable fructose-bisphosphate aldolase activity. Predicted to be involved in fructose 1,6-bisphosphate metabolic process and glycolytic process. Predicted to be active in cytosol. Is expressed in brain. Human ortholog(s) of this gene implicated in autoimmune disease of the nervous system. Orthologous to human ALDOC (aldolase, fructose-bisphosphate C).

NR:

description
PREDICTED: fructose-bisphosphate aldolase C-like

GO:

id name namespace
GO:0006096 glycolytic process biological_process
GO:0004332 fructose-bisphosphate aldolase activity molecular_function

KEGG:

id description
K01623 ALDO; fructose-bisphosphate aldolase, class I

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924004.2 True 1731 mRNA 0.47 9 6029246 6033511
XM_026924005.2 False 1689 mRNA 0.47 9 6029246 6033451

Neighbor

gene id symbol gene type direction distance location
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding downstream 643 6025463 ~ 6028603 (-)
hnf1ba hnf1b coding downstream 25897 5989418 ~ 6003349 (-)
synrg synrg coding downstream 53527 5939052 ~ 5975719 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 232271 5787013 ~ 5796975 (-)
proca1 proca1,LOC108278205,LOC108443503,LOC107582608,LOC107672398,LOC107752378,LOC107694032,LOC106581195 coding downstream 256726 5768627 ~ 5772520 (-)
rskra LOC108277445 coding upstream 1562 6035073 ~ 6047606 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 15942 6049453 ~ 6080648 (-)
glod4 glod4,LOC102784280 coding upstream 50229 6083740 ~ 6087090 (-)
nxn nxn,typx coding upstream 61159 6094670 ~ 6156851 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding upstream 125337 6158848 ~ 6161315 (-)
G221068 NA non-coding downstream 158619 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 233793 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 525304 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 540238 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 574323 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 58402 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 169553 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 292580 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 383371 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 480317 6513828 ~ 6514965 (-)
dynll2a dynll2a,LOC107554284 other downstream 4893 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 225273 5797928 ~ 5803973 (-)
G220990 NA other downstream 318355 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 429871 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1057727 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 585661 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1358904 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2371318 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2907507 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3643748 9677259 ~ 9713059 (-)

Expression


Co-expression Network