trarg1a (tusc5)


Basic Information

Item Value
gene id trarg1a
gene name tusc5
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 11174002 ~ 11185519 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924021.2
CTGTTTCCGTTGGACTGAAATGTAGAGAATGGTGTGAGCGATAGGGAGTGCCTCTCTGCACCTCTGTCCATGGGGAGAGTCCGGGCGCAGCAGCGCGGGGGCTGATGGGAGGAACAGTGCACACTCCTGGAGTGAGTAGTGTGCAGTGAGGTGAAGGAAAGCTCGAGCAGTCCTCATCAGCAGCTTTAAACACAACAAAGCCAAAAGCCCGCGGTGCGACACACAgcttctgctctctctctctctctctctctctctctctctctctctctctctctgtgcgttTGTGCGCGTAGaaaagtggctttttttttactctcagaCACCTTCAGATCTTGCGCAAAGAGGAAAAGTGATGATGGTGCGCTTTGtgtgaACTGACTTTGGGAGGTGAAGCATGGCCATTAACACTGACAGTGCGTTTGAGAAGTCGGGTCTGGCTGAAAGCGGCAGGGCGCAGCAGGAAACGGAGAAGCTGCTGAGTGACGGCGGAGCAGGAAACGGGCTCAGCATGTCCACCTCCGGCACTCTCACTGTGGACGTAGAGAAAGGAGCCGAGGGCGAGCAGAACGGCCACGGAGGACCGCAGAGATCCAGCTCGGTGGTGCAGCTCGCCTCAGCACCCCTGTCCTCCTCCAGACCAGGCCTGAGCCGCACCTCATCCACCGGCAACGCGGTGCAGGAGCAGCCCAAGCCCAAAGACTACCTGCTGCTGGTCATCCTGTCCTGCTTCTGCCCCGTGTGGCCCGTCAGCATCGTAGCGCTCGTGTATTCCGTCATGTCCAGAAACAGCCTACAGCAGGGGGATATCGATGGGGCGAGACGTCTGGGTCGCCTGGCTCGCCTACTCAGCATCGTGGCTATCGTCCTGGGCCTGGTCGCGATTATCGTCTACGTTGTGGTGTCAGTGAGCTAAAGTACGGGAACACCCCGCTGACGAGAAATAACCATCTACAGCAAAAAACCTCTACTGTGTAATTAGAAAAAATGAGATCTTTCTTATAAAATTACctacaaaacataaaaagaaattaaaaggaGTGTATCAAAAATAAGATctatttacagagaaatgacaTGCATGCTTTAAGTTAATGTGTGcttgataaaaaaagaaataaaatgaagagtGATTGCTTAGTGTACACGGAACACTGTTCTGAGGAATTGACTGAAGATGATGCCAAGGGTGAGAGCGGAACTCTTCAGCAAGATGGGGACTTTGAGCTGCAAGCTGCATCATAACCTTATATTACTCCCAGATGTGCAGATATATTTGCAATATAACTCTTcacatatattttatgtaaagaTTTGTATGACAAGATGAAATGAACTTTGGAGAAACAGGAGAGTCTTAGCTTTGCTGGATGACTTGTGACCTCATGGACTTTGTCCAAAGAAAATGGAAGCGATTCTGAATGGGAGGagttttttgtttacattatttattttgtagctTTTGATTTATGAAGACGACCATGTGCATGTGAAAAGCCACGCGACATCACCTCCCATTAGAAAGACTGTAGTTTTTCGTGGACTTTTAAAGTGGATTGCACACACTACATGTCCGGGGCTGGTCTTGGCACAGATGAGCTGATTCTCTTTGCCTTGCTGTTGGAAGGGGTCCGAGTAGTGAGCACTGAAACGCATGTTGAATCCCCTTCCCAATCTGAGCTACCTGCTGAAGCATGGACAAACGTCTAGAGGCATGAAGAGGGCAGGACCACTTCACCGTGCTCTGTGCCAAAGCCCTCAGAGCTGTACTCTACCCACAATCACTGAAACCACTAGTGCAGAATGCCAGTCTAGCTCTTTTGGACTCCTAACTTGTATACGTATGCTATATAATCCATATACTTATCAAACTATTTAGGCATGCTGTAGACAGACAGTATATCTGTTTgctattctcacacacacaaaaaattgcCATCTTACAAATTAAGTTGTTTCTTTGATATGACACAAAgaaattacagtatttaatgcATCTCTGCAAAATTAACCTAGTGACgtaaaaaaggaaatttatAATCTAAATTTATAATCTAAAACTTTGTTGAAGTTAAATACAAAGAGACCTAGATTTGGTTATTAGGCTTTTTCCTCATAGATGGAATACATGATGACTTTCTcattctgttcaatctgaattaAGTATTTTACTGCCCCATTCACTGATTTCTAAGCACTTTATTACCTGATCCTTTTCAGGATTTTTACTTCAGATTCATGATTCTCTTCACATTGATtgacaaatttcaaatttatgtatttttgtctttgaTATATTGCCTTGTTTTTTTGTACAGGTAGAGACTGTTACCATCTACAAACCACCCAGAATCACTAATCACAGGATTCTGTATACCATTTTACCTCATCCACTGCTTTTCTGTCCataccatgtgtgtgtgtgaatgtgtgtgaatgtaagaGGTAGAAATGCTAAGCTTTGCTCTACGCTGTGGAACATTTAGACAAACACAGCTCACTTATAGAAATATCTGTTTGATACATCAGGTACTTACTGTACATTAAAGTGCAGTGCCAATATTGATGAGATGCACAAGTGCTGCTATGTGTCTAATACTGTGATTTTTCCTTCAATTGTTTAGGGTACCTTGGTTCACTTTGGATATGGATTTTCATTTCATAGGTTCATTGTGTACATCTGCATGGGTGGAATAAATGTTAACATGCATGGTC
>XM_034310460.1
aataaagtggacggtgagtgtatataactCATAGCTCCTGGATCCAGGGATCGATCTtaagctcgggttactgtctgcatTCACACGTTTCGCACGTTCTCCCTGTtgtgaACTGACTTTGGGAGGTGAAGCATGGCCATTAACACTGACAGTGCGTTTGAGAAGTCGGGTCTGGCTGAAAGCGGCAGGGCGCAGCAGGAAACGGAGAAGCTGCTGAGTGACGGCGGAGCAGGAAACGGGCTCAGCATGTCCACCTCCGGCACTCTCACTGTGGACGTAGAGAAAGGAGCCGAGGGCGAGCAGAACGGCCACGGAGGACCGCAGAGATCCAGCTCGGTGGTGCAGCTCGCCTCAGCACCCCTGTCCTCCTCCAGACCAGGCCTGAGCCGCACCTCATCCACCGGCAACGCGGTGCAGGAGCAGCCCAAGCCCAAAGACTACCTGCTGCTGGTCATCCTGTCCTGCTTCTGCCCCGTGTGGCCCGTCAGCATCGTAGCGCTCGTGTATTCCGTCATGTCCAGAAACAGCCTACAGCAGGGGGATATCGATGGGGCGAGACGTCTGGGTCGCCTGGCTCGCCTACTCAGCATCGTGGCTATCGTCCTGGGCCTGGTCGCGATTATCGTCTACGTTGTGGTGTCAGTGAGCTAAAGTACGGGAACACCCCGCTGACGAGAAATAACCATCTACAGCAAAAAACCTCTACTGTGTAATTAGAAAAAATGAGATCTTTCTTATAAAATTACctacaaaacataaaaagaaattaaaaggaGTGTATCAAAAATAAGATctatttacagagaaatgacaTGCATGCTTTAAGTTAATGTGTGcttgataaaaaaagaaataaaatgaagagtGATTGCTTAGTGTACACGGAACACTGTTCTGAGGAATTGACTGAAGATGATGCCAAGGGTGAGAGCGGAACTCTTCAGCAAGATGGGGACTTTGAGCTGCAAGCTGCATCATAACCTTATATTACTCCCAGATGTGCAGATATATTTGCAATATAACTCTTcacatatattttatgtaaagaTTTGTATGACAAGATGAAATGAACTTTGGAGAAACAGGAGAGTCTTAGCTTTGCTGGATGACTTGTGACCTCATGGACTTTGTCCAAAGAAAATGGAAGCGATTCTGAATGGGAGGagttttttgtttacattatttattttgtagctTTTGATTTATGAAGACGACCATGTGCATGTGAAAAGCCACGCGACATCACCTCCCATTAGAAAGACTGTAGTTTTTCGTGGACTTTTAAAGTGGATTGCACACACTACATGTCCGGGGCTGGTCTTGGCACAGATGAGCTGATTCTCTTTGCCTTGCTGTTGGAAGGGGTCCGAGTAGTGAGCACTGAAACGCATGTTGAATCCCCTTCCCAATCTGAGCTACCTGCTGAAGCATGGACAAACGTCTAGAGGCATGAAGAGGGCAGGACCACTTCACCGTGCTCTGTGCCAAAGCCCTCAGAGCTGTACTCTACCCACAATCACTGAAACCACTAGTGCAGAATGCCAGTCTAGCTCTTTTGGACTCCTAACTTGTATACGTATGCTATATAATCCATATACTTATCAAACTATTTAGGCATGCTGTAGACAGACAGTATATCTGTTTgctattctcacacacacaaaaaattgcCATCTTACAAATTAAGTTGTTTCTTTGATATGACACAAAgaaattacagtatttaatgcATCTCTGCAAAATTAACCTAGTGACgtaaaaaaggaaatttatAATCTAAATTTATAATCTAAAACTTTGTTGAAGTTAAATACAAAGAGACCTAGATTTGGTTATTAGGCTTTTTCCTCATAGATGGAATACATGATGACTTTCTcattctgttcaatctgaattaAGTATTTTACTGCCCCATTCACTGATTTCTAAGCACTTTATTACCTGATCCTTTTCAGGATTTTTACTTCAGATTCATGATTCTCTTCACATTGATtgacaaatttcaaatttatgtatttttgtctttgaTATATTGCCTTGTTTTTTTGTACAGGTAGAGACTGTTACCATCTACAAACCACCCAGAATCACTAATCACAGGATTCTGTATACCATTTTACCTCATCCACTGCTTTTCTGTCCataccatgtgtgtgtgtgaatgtgtgtgaatgtaagaGGTAGAAATGCTAAGCTTTGCTCTACGCTGTGGAACATTTAGACAAACACAGCTCACTTATAGAAATATCTGTTTGATACATCAGGTACTTACTGTACATTAAAGTGCAGTGCCAATATTGATGAGATGCACAAGTGCTGCTATGTGTCTAATACTGTGATTTTTCCTTCAATTGTTTAGGGTACCTTGGTTCACTTTGGATATGGATTTTCATTTCATAGGTTCATTGTGTACATCTGCATGGGTGGAATAAATGTTAACATGCATGGTC

Function

NR:

description
PREDICTED: tumor suppressor candidate 5

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924021.2 True 2715 mRNA 0.44 4 11174002 11184866
XM_034310460.1 False 2450 mRNA 0.43 4 11174002 11185519

Neighbor

gene id symbol gene type direction distance location
tmem199 tmem199,LOC107592604 coding downstream 105774 11064601 ~ 11068228 (-)
gemin4 gemin4 coding downstream 150672 11017152 ~ 11023330 (-)
pipox pipox coding downstream 335874 10826289 ~ 10838128 (-)
usp32 usp32,LOC108425843 coding downstream 480731 10651351 ~ 10693271 (-)
si:ch211-167j9.5 LOC108277907,LOC107734097,LOC107690468 coding downstream 522792 10642238 ~ 10651210 (-)
abhd15a LOC108278383 coding upstream 50121 11235640 ~ 11243992 (-)
exo5 exo5 coding upstream 88244 11273763 ~ 11279974 (-)
rflnb rflnb coding upstream 95812 11281331 ~ 11284623 (-)
vps53 vps53,LOC107744780,LOC107664930,LOC107743667 coding upstream 102086 11287605 ~ 11308511 (-)
mnta mnt,LOC105027537 coding upstream 133756 11319275 ~ 11336278 (-)
G224287 ywhae,LOC107690422,LOC107578326,LOC106567579 non-coding downstream 5334 11105571 ~ 11168668 (-)
G224086 NA non-coding downstream 104044 11069684 ~ 11069958 (-)
G223855 LOC108277744 non-coding downstream 412269 10756498 ~ 10761733 (-)
G223827 NA non-coding downstream 537208 10636156 ~ 10636794 (-)
G223808 NA non-coding downstream 562154 10560426 ~ 10611848 (-)
G224358 NA non-coding upstream 209201 11394720 ~ 11397828 (-)
G224360 NA non-coding upstream 238042 11423561 ~ 11423868 (-)
G224361 NA non-coding upstream 239110 11424629 ~ 11424859 (-)
G224370 NA non-coding upstream 278729 11464248 ~ 11464691 (-)
G224371 NA non-coding upstream 280434 11465953 ~ 11466243 (-)
appbp2 appbp2 other downstream 452669 10708252 ~ 10721333 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other downstream 861486 10308050 ~ 10312516 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other downstream 1460943 9677259 ~ 9713059 (-)
G222809 oaf other downstream 2227103 8941018 ~ 8946899 (-)
sorl1 sorl1,LOC107717255 other downstream 2695090 8404829 ~ 8478912 (-)
aipl1 aipl1,LOC106612843 other upstream 2731 11188250 ~ 11220656 (-)
tbx4 tbx4,LOC107548556,LOC107685071,LOC107664909,LOC107589698,LOC107743740,LOC107757041 other upstream 1203347 12388866 ~ 12407489 (-)
bcas3 bcas3,LOC107743646 other upstream 1249687 12435206 ~ 12638725 (-)
akap1b akap1b,akap1,LOC108278245 other upstream 1735444 12920963 ~ 12999031 (-)
nf1a nf1 other upstream 1755391 12940910 ~ 13007559 (-)

Expression


Co-expression Network