acad8 (acad8,LOC107582571)


Basic Information

Item Value
gene id acad8
gene name acad8,LOC107582571
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7549827 ~ 7563594 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924022.2
CgtggatctggcaaccctgagcACTAACCCCGAGTCTGTGAAGCAACATGGCGGCGGCTGCTGCTGGGTCTGTGTGGCGGCTTGTCCGGTCCGCCTCATGTAGCATTAGCAGAAGTAAAGGTTTAATATTAACCAGAGTGCAGAGAAGAGGAATCGCAGCCTGCATTGATCCTTCTGTAGGTCTCACAGATGAGCAGAAAGAATTCCAGAAAGTGGCGTTTGATTTCGCTGCCAATGAAATGGCACCACACATGGCACAATGGGACGAGAAAGAAATCTTTCCCGTGGAAACCATGAGAAAAGCAGCCCAGCTCGGGTTTGGGGGAATTTACGTGCAGCCGGACGTTGGGGGCTCGGGACTGTCTCGCCTCGACACGTCCATCATCTTTGAAGCTTTGTCCACTGGCTGTGCGAGCACCACGGCCTACATCAGCATTCATAAtatgTGCGCCTGGATGATCGACACATTCGGTAATgatgagcagagagagaagTACTGTCCTGATCTCTGCTCCATGGAGAAGTTCGCCTCCTACTGTCTGACTGAGCCTGGGAGTGGAAGTGACGCAGCGTCGCTGTTAACCAGCGCAAAGTTGCAAGGAGACCATTACATTCTGAACGGATCCAAGGCCTTCATCAGTGGTGGAGGAGATACAGATGTGTATGTAGTGATGTGTCGTACTGGTGGGAAGGGCCCCAAGGGCATCTCCTGTCTGGTGGTGGAGAAAGGAACTCCAGGACTCAGTTTTggcaaaaaagagaagaagGTCGGTTGGAACTCGCAGCCCACGAGAGCAGTAATCTTTGAAGACTGTGCGGTTCCGGTGACTAATCGGCTGGGAGCAGAGGGAGAGGGCTTCAACATCGCCATGCGTGGCCTCAACGGGGGCAGAATTAACATTGCTTCCTGCTCTCTAGGAGCTGCTCATGCGTCTGTCCTGCTGGCCCGAGATCACATACGTGTGCGCAAACAGTTTGGGGAACCTCTTGCAAACAGCCAGTTCCTGCAGTTTAAGCTGGCTGAAATGGCCACGAAGCTGGTAGCGTCTCGGTTGCTGGTGCGTCAGGCGGCTGTTGCTCTGCAGGAGAACAGACCAGACGCAGTGTCACTCTGCTCCATGGCAAAACTCTTCGCCACTGATGAATGCTTTGCTATATGTAACCAGGCTCTGCAGATGCATGGCGGATATGGCTACCTCAAGGACTACGCAGTACAGCAGTTTGTTCGAGATATCCGAGTGCATCAGATATTAGAAGGAACCAATGAAGTGATGAGGATGATCATTTCCAGAAGCTTACTGACAGAGTTGTGATCATGAAATCAAGACCTCAAGCTTGTCATGGATTCTGTTACAATAGAAGCAACTAATCGATAATGAATCACATAGTGAGTGAGAAGCTGTTTGTAGTtagaaatatatagaaatagtGTTTTTTGTTGTATATTCTCAATCATGTGTACTGCTCTAATAAGACATGCAGTAGAACACATTTccaacaaagaaaatcaaatgtTTGATTACA
>XM_034310356.1
AGTTTGTCCATACAAGTTCGGAGGTTCTAATTacgatgtggtgtgtgtttaagtggTTTTGGTCAGGAAAAAATGGATGCTTCTGTAGGTCTCACAGATGAGCAGAAAGAATTCCAGAAAGTGGCGTTTGATTTCGCTGCCAATGAAATGGCACCACACATGGCACAATGGGACGAGAAAGAAATCTTTCCCGTGGAAACCATGAGAAAAGCAGCCCAGCTCGGGTTTGGGGGAATTTACGTGCAGCCGGACGTTGGGGGCTCGGGACTGTCTCGCCTCGACACGTCCATCATCTTTGAAGCTTTGTCCACTGGCTGTGCGAGCACCACGGCCTACATCAGCATTCATAAtatgTGCGCCTGGATGATCGACACATTCGGTAATgatgagcagagagagaagTACTGTCCTGATCTCTGCTCCATGGAGAAGTTCGCCTCCTACTGTCTGACTGAGCCTGGGAGTGGAAGTGACGCAGCGTCGCTGTTAACCAGCGCAAAGTTGCAAGGAGACCATTACATTCTGAACGGATCCAAGGCCTTCATCAGTGGTGGAGGAGATACAGATGTGTATGTAGTGATGTGTCGTACTGGTGGGAAGGGCCCCAAGGGCATCTCCTGTCTGGTGGTGGAGAAAGGAACTCCAGGACTCAGTTTTggcaaaaaagagaagaagGTCGGTTGGAACTCGCAGCCCACGAGAGCAGTAATCTTTGAAGACTGTGCGGTTCCGGTGACTAATCGGCTGGGAGCAGAGGGAGAGGGCTTCAACATCGCCATGCGTGGCCTCAACGGGGGCAGAATTAACATTGCTTCCTGCTCTCTAGGAGCTGCTCATGCGTCTGTCCTGCTGGCCCGAGATCACATACGTGTGCGCAAACAGTTTGGGGAACCTCTTGCAAACAGCCAGTTCCTGCAGTTTAAGCTGGCTGAAATGGCCACGAAGCTGGTAGCGTCTCGGTTGCTGGTGCGTCAGGCGGCTGTTGCTCTGCAGGAGAACAGACCAGACGCAGTGTCACTCTGCTCCATGGCAAAACTCTTCGCCACTGATGAATGCTTTGCTATATGTAACCAGGCTCTGCAGATGCATGGCGGATATGGCTACCTCAAGGACTACGCAGTACAGCAGTTTGTTCGAGATATCCGAGTGCATCAGATATTAGAAGGAACCAATGAAGTGATGAGGATGATCATTTCCAGAAGCTTACTGACAGAGTTGTGATCATGAAATCAAGACCTCAAGCTTGTCATGGATTCTGTTACAATAGAAGCAACTAATCGATAATGAATCACATAGTGAGTGAGAAGCTGTTTGTAGTtagaaatatatagaaatagtGTTTTTTGTTGTATATTCTCAATCATGTGTACTGCTCTAATAAGACATGCAGTAGAACACATTTccaacaaagaaaatcaaatgtTTGATTACA

Function

symbol description
acad8 Predicted to enable acyl-CoA dehydrogenase activity and flavin adenine dinucleotide binding activity. Predicted to act upstream of or within lipid metabolic process. Orthologous to human ACAD8 (acyl-CoA dehydrogenase family member 8).

NR:

description
isobutyryl-CoA dehydrogenase, mitochondrial isoform X3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0050660 flavin adenine dinucleotide binding molecular_function
GO:0003995 acyl-CoA dehydrogenase activity molecular_function

KEGG:

id description
K11538 ACAD8; isobutyryl-CoA dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924022.2 True 1524 mRNA 0.49 11 7549827 7560913
XM_034310356.1 False 1432 mRNA 0.48 11 7549827 7563594

Neighbor

gene id symbol gene type direction distance location
lim2.3 lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599 coding downstream 173762 7372414 ~ 7376065 (-)
LOC113532840 LOC108277937 coding downstream 184684 7355180 ~ 7365143 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 265854 7276448 ~ 7283973 (-)
alcamb LOC108278292 coding downstream 296221 7229918 ~ 7253606 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding downstream 324281 7198831 ~ 7225546 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding upstream 7607 7571201 ~ 7576277 (-)
jam3a jam3 coding upstream 14461 7578055 ~ 7591818 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 181705 7745299 ~ 7907858 (-)
LOC113532837 LOC108277602 coding upstream 558820 8122414 ~ 8137209 (-)
dixdc1a dixdc1 coding upstream 640068 8203662 ~ 8212072 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 177507 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 328898 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 371531 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 425625 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 676468 6872831 ~ 6873359 (-)
LOC113532601 NA non-coding upstream 12960 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 568769 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 599039 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 633211 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 677470 8241064 ~ 8242176 (-)
zgc:77784 LOC108277423 other downstream 86328 7392415 ~ 7463499 (-)
LOC113532805 NA other downstream 896409 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1525474 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1745854 5797928 ~ 5803973 (-)
G220990 NA other downstream 1838936 5710098 ~ 5710891 (-)
sorl1 sorl1,LOC107717255 other upstream 841235 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1377424 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2113665 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2744456 10308050 ~ 10312516 (-)
appbp2 appbp2 other upstream 3144658 10708252 ~ 10721333 (-)

Expression


Co-expression Network