lim2.3 (lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599)


Basic Information

Item Value
gene id lim2.3
gene name lim2.3,LOC108277938,LOC108435296,LOC103047043,LOC107748598,LOC107699889,LOC107597599
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 7372414 ~ 7376065 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924050.2
caaaaattgtgtcactgtcagATATATATGGACCAGATGCAAATTCCCTTCAGCGATCGACTGTGTCTCTGGCAGCTCTATTGTCCCTCAGTGCTGTGCTGGTGCCTGAACACGACAGAAACACATCTGTCTATGGTAGTGCAAGAACTGTCTGTCCTGGTGTAACTGAGCCCAAAGTATTTAATTCAACAAAGTAGGTGAAGAATACATAAAGGTGAACGATGTACAGCTTTATGGGAGGTGGCTTGTTCTGTGCTGGAGTTGGAAATATACTGCTGGTGGTCTCTACAGCCACAGATTACTGGATGCAGTATCGCCAGGCCAGTGGTTACATGCACCAGGGCCTGTGGCGCTACTGCGTGCCTGGGAAATGCATGCTACACACTGACAGCATTGCTTACTGGGATGCCACCCGTGCATTCATGATCCTGGCCATCTTGGCATGCTTCTTTGGCCTGCTTATAGGCATCATGGCTTTCATTAACTACACCTCTTTCGATGTCTTCGACAAAACATTTGCTGCTGGAATTCTCTATTTCATTTCATGCTTTTTTGTGCTTCTGGCAATGGCTGTATACACTGGGGTGACCGTGAACTACTATGGGAAGCGATATGGAAACTGGAGATTCTCCTGGTCATATATAATAGGCTGGGTGTCAGTGGTGCTTACATTCTTTTCAgGTATATTCTACATGTGTGCTTATCGGATGCAAGCACCAATAGGCCCCATGTCACGCTGAGGCATCTCATCCTAGATCAACTCATCATTCAGTCTGATGGTGATCCACCACATCATCATGGATgcttacattttaattcatttgtttaccTCAtggttaatgaataaaatggttGGGACAAATATGTGCTACTTTAATTCACAATAAAACAATCCTAGAGAATACAGTATTTTGGCCTGGATATATT

Function

symbol description
lim2.3 Predicted to be a structural constituent of eye lens. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in plasma membrane. Is expressed in lens and solid lens vesicle. Human ortholog(s) of this gene implicated in cataract and cataract 19 multiple types. Orthologous to human LIM2 (lens intrinsic membrane protein 2).

NR:

description
lens fiber membrane intrinsic protein-like isoform X3

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924050.2 True 927 mRNA 0.44 6 7372414 7376065

Neighbor

gene id symbol gene type direction distance location
LOC113532840 LOC108277937 coding downstream 7271 7355180 ~ 7365143 (-)
LOC113532980 LOC108277641,LOC108435272,LOC106613048,LOC106581142,LOC105005794 coding downstream 88441 7276448 ~ 7283973 (-)
alcamb LOC108278292 coding downstream 118808 7229918 ~ 7253606 (-)
dyrk1ab dyrk1a,LOC108278223,LOC108435291,LOC107726100,LOC107662773 coding downstream 146868 7198831 ~ 7225546 (-)
trnap-cgg_8 NA coding downstream 176820 7195523 ~ 7195594 (-)
acad8 acad8,LOC107582571 coding upstream 173762 7549827 ~ 7563594 (-)
vps26b vps26b,LOC103021802,LOC107582573,LOC107699898,LOC107748589 coding upstream 195136 7571201 ~ 7576277 (-)
jam3a jam3 coding upstream 201990 7578055 ~ 7591818 (-)
cadm1b cadm1b,LOC108277410,LOC108435304,LOC107713448,LOC107662762,LOC107582575 coding upstream 369234 7745299 ~ 7907858 (-)
LOC113532837 LOC108277602 coding upstream 746349 8122414 ~ 8137209 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding downstream 94 7371370 ~ 7372320 (-)
G221844 NA non-coding downstream 151485 7218666 ~ 7220929 (-)
G221814 NA non-coding downstream 194118 7133517 ~ 7178296 (-)
G221812 NA non-coding downstream 248212 7122717 ~ 7124202 (-)
G221683 colca2 non-coding downstream 499055 6872831 ~ 6873359 (-)
LOC113532601 NA non-coding upstream 200489 7576554 ~ 7577056 (-)
G222367 NA non-coding upstream 756298 8132363 ~ 8132704 (-)
G222377 NA non-coding upstream 786568 8162633 ~ 8162848 (-)
G222391 NA non-coding upstream 820740 8196805 ~ 8197207 (-)
G222522 NA non-coding upstream 864999 8241064 ~ 8242176 (-)
LOC113532805 NA other downstream 718996 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 1348061 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1568441 5797928 ~ 5803973 (-)
G220990 NA other downstream 1661523 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1773039 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 16350 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1028764 8404829 ~ 8478912 (-)
G222809 oaf other upstream 1564953 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2301194 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 2931985 10308050 ~ 10312516 (-)

Expression


Co-expression Network