LOC113532622


Basic Information

Item Value
gene id LOC113532622
gene name NA
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6583963 ~ 6605064 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924070.2
AGCTGAATTAACAGAACGGTATGGCGACATAGTTTTAGTAGTGGCTATGATGAACATTCATGAATATGACTTCATATTCTTTCAAAAATCATGAGGTTTTTGCCAGCCAGCTAAAGTATCCAGCCTCACACGGAGGACAGGAACTCTGCACACATCACCAGGAACTGTATATGTGCAGACAGTGTAAAATTGTGACACAGAAGTTACTCAACTGCCTCAGCAACATGTTTGCAGCTGTGCTGTTTATAACAGGCATATACACAGCAGTGGGATTCAACATATTCACAAAACCAGTGAGCAAGTTTACAAATGATGACCCACTGTTCCGTCAAACCATTATTCAATCAAGGGACAGagTTTTTGTCCCTTCTCCTACTTCTGGAGACGTTTCCAGATGCGCAGAGAAAATCTGTTCTAGAATAAATGTTACtgGTCCCATTGCATCTGCAGCATCCTGGAGTGAAGATACGGAGCAGTTCCTgGTTTGTAACCAAGTTTGGACAATGAATTCATCAACTGAATATTTCAACAAAAACTGTACATACATGTCTGGTCATCAGAAAAAGAGTAAAATCTATCCCGAAAAGTTGGTTTTACAGCTACTGGAACAAAatgcaaacaacaacaataacaataaatataaaggcAGTCAAACATCTCTTCATCAAGACCACTGGAGGAAGAAAAGAGCTCTACAGGATGATGCTGACactgatgaagatgaaaatgaagATGAAGGTACAGAGATCAGTTTTGTGCTGGACGGCTCTGGTAGCATTGAGGGGGAAGATTTTGAAAGGGCAAAAGACTTTATTTACAACATGATGAATAACTTTTGGACAAAAAGTTTCAATTGCAAGTTTGCAGTAGTGCAGTATGGGAGAGACATAAGGACAGAACTCTCtctgaaagaaaataatgaccGTCTCAGAGCCTTGGATAAGGTGAAGAACATAAAACAGATTCAAGGGTTCACCAACACTGCTTCATCCCTCTACTATGTTCTCACAGATGTTTTTGTTCCTCAACATGGATCAAAAAAGAATGccaaaaaaatgattattttgctGTCTGATGGACAAATGTTAGGAGATGAAAGAAACTTCGCAGAGATATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGGTGGGGCTGGAGGTTCTGGATAAACCACAGGTAATACAAGAGATGACAGAGATAGCTGGTAATGAACACCGatttttcagtatttctaaTTACGCCAGCTTGAAAAACATTCTCTCGTCTTTGGAAAAAAGCATAATTGGAATTGAAGGGATGGAGATCGCTTTTGTGCTGGACGGCTCTAGTAGCATTAGCCCGCTGGATTTTGAAAGGGCCGAAGTACTTATTAGTAAGGTGATGAAAAATGTCTGGACAACATGTTTCAGTTGCAAGTTTGCAGTAGTGCAGTATGGGACAGACATAAGGACAGAACTCTCtctgaatgaaaataatgaCCATCTCAGAGCCTTGAATAAGttgaaaaacataaaacagattCATGGGAATACAAAGACTGCTTCAGCCCTCTACCATGTTCTCACAGACGTTTTTGTTCCTCAAAGTGGATCAAAAGAGAACGccaaaaaaatgattattctACTGTCTGATGGAGAGATGACGGGAGATGAAAGAAACCTCACAGAGGTATTGAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGgtGGGGCTGGAGGTTCTGCATAAACGAAAGGCAATAGAAGAGATGATAGACATAGCTGGCAGTGAAAACcattttttcagtatttctaattattttgaGTTGGAAGACATTCTCTCTTCTTTGGAAAAAAGCATAATTGGAATTGAAGATGCAGGGACGGAGATCGCTTTTGTGCTAGACGGCTCTGCTAGCATTGAGAAGGAAGATTTTGAAAGAGCCAAAGACTTTATTAATACTGTGATGAATAATGTTCGGACAACATGTTTCAGGTGCAAGTTTGCAGTAGTGCAGTATGGGAGAGACATAAGGACAGAATTCTctctgaaagaaaataataacctTCCCAGAGCCTTGGATAAGGTGAAGAACATAAAACAGATTTATGGGTTCGCAAAGACAGCTTCAGCCCTCTACCATGTTCTCACAGACGTTTTTGTTCCTCAAAGTGGATCAAAAGAGAATgccaaaaaaaagattattctACTGTCTAATGGAGAGATGTTGGTACATCCAATAAACCTCACAGAGGTTTTAAACATGCCACAGATGGAGGGGATTGTTCGCTATGCTATAGGGGTGGGGCCGGAGGTTCTGAATAAAACACAGGCAATACAAGAGATGACAGCGATAGCTGGTATCAAAGACAGATTTTTCAAGATTTCTAATTATGACAGTTTGGAAAACATTCTCCCTTCTTTGGAAAAAAGCATAACTGGAACTGAAGGAAAGGGAATGCAGCTATTCTGCCTTTCCTAGGATCCCCAAAGGAGAGCATTGAGTGCACAACTTCAAACCCAACTGGATGCTGAGAGAAATGCTGTTACACGCCTCTGAACAGTTTAATCCTGAACAATATTGGTACAAATCAGgtcaaaatgataaataataattaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924070.2 True 2635 mRNA 0.40 21 6583963 6605064

Neighbor

gene id symbol gene type direction distance location
itgae.2 NA coding downstream 4002 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 29512 6536048 ~ 6554451 (-)
mrpl28 mrpl28,LOC107659942,LOC107554268 coding downstream 51079 6527472 ~ 6532884 (-)
mos mos coding downstream 70230 6511236 ~ 6513733 (-)
hip1 hip1,LOC107714882,LOC107659933,LOC107672373 coding downstream 95378 6447125 ~ 6488585 (-)
tubd1 tubd1,LOC107581164 coding upstream 143852 6748916 ~ 6756266 (-)
LOC113532877 LOC108277444 coding upstream 226170 6831234 ~ 6840971 (-)
LOC113532633 pou2af1 coding upstream 278064 6883128 ~ 6888991 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 326458 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 354059 6959123 ~ 7039860 (-)
G221448 dnhd1 non-coding downstream 68998 6513828 ~ 6514965 (-)
G221461 NA non-coding downstream 166338 6416882 ~ 6417625 (-)
G221450 NA non-coding downstream 167155 6326091 ~ 6416808 (-)
G221245 NA non-coding downstream 379033 6203064 ~ 6204930 (-)
G221214 NA non-coding downstream 491529 6091913 ~ 6092434 (-)
G221618 NA non-coding upstream 82525 6687589 ~ 6688311 (-)
G221638 NA non-coding upstream 154346 6759410 ~ 6759618 (-)
G221633 NA non-coding upstream 155592 6760656 ~ 6761787 (-)
G221659 NA non-coding upstream 201091 6806155 ~ 6806367 (-)
G221681 NA non-coding upstream 262720 6867784 ~ 6870274 (-)
dynll2a dynll2a,LOC107554284 other downstream 559610 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 779990 5797928 ~ 5803973 (-)
G220990 NA other downstream 873072 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 984588 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1612444 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 14108 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 787351 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1799765 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2335954 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3072195 9677259 ~ 9713059 (-)

Expression


Co-expression Network