rskra (LOC108277445)


Basic Information

Item Value
gene id rskra
gene name LOC108277445
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6035073 ~ 6047606 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924085.2
TGGTCTGAGCATCAAATCTGAGCTGGAATGACACTCTCCTGTTTTGAAACACTAAATGCGGTGTAAGAAAGTGCTTAAATGaagttttttaaacaaagaattgCCATCTGAGTTCCAGTAGCCCACAGGAGCGATTATTTAATGGTGATTTGATGAATAAGAAGAACATCATTCATTTGTTGACAACATGCGCGTGCTATGGGCGGTGCTGTGAGCAAAAACAAGACACCTTTCTCATTAGTGGAGAAGAGGAGTTTGTCCAGTAAGCAAAGGTTCCTGTCTCCCCATGATGTACTTGTCCAAAGCAGTCCATTGAGGCAGCAGAGTGACCAGTGCACATCATCCCAATtcaataaatgtacaaaaagtcAAGAGACAAATCCTCTACCTTCATCCACTTCCATCTTCCTGCCAGAATTTCCGCACCGCGAGGGGCGACCTGCACATTTACAGGTAACTGGGGTAATAGCGAAAGGATCATTTGGCCCTATTCTGAAGGTGAATGACTCGGCAAAAGGGAAGACCTATGCTATAAAGGTTTTACCCAAATCTGAGGTTCTGAGACATGGAGCCCTGGAACAGTCGAAAGAGGAGGTTATAATCCAGCGGCAGCTCAAACACGCTTTTGTCCTCGGTCTGGAGGACTGTTGGCAGAGTCAGAACAACCTCTTCGTCAtgtgtgattactgcagcaCTGGAGATCTGTACACCTACTGGATGCTAACTGGCCAGTTTAAAGAGAGGGAGGTTCGAGTGTTTGCTGCTGAACTCGGCAGTGCTTTAGGTTTTCTTCATGACTTTGGGATAATGCACAGGGATTTGAAGATGGAGAACATCCTTTTAACTGACCAAGGTCACGTCTGcctgggagattttggactgtcTCGTCGACTTGAGCGTGGTGAAAAAGCATTTACAATCTGTGGGACAATCCAATACATGGCTCCTGAGGTTCTGACTGGGGGTCCTTACAGCCATGCAGCAGACTGGTGGTCCCTGGGTATCCTGTTATACACACTGGCTGAGGGAGAGttCCCACTTCCTCCAGAGTCAGACCACAGCGGCATGCTGACCAAAGTCACTGAGCATTCTTATGAAATGCCTCTGAGCTTCAGTCCTGCACTGGCCCTGCTACTCACGGAGCTCCTATGCAAGACCCCCATGCGACGTCTGCGCTGTCTGGAACGCTATATGAGTCAGAGGTTTTTTAATGGCTTCTCCTTTGACTCTCAGGTGCTGATGAAGAGTCCCATTCTACCAATCCTTGAGCTCAAGGATCACCCTAATCGGCCAGAGATATCAAAGAGGGGATTAACATTCGACCAGCTTCAGGACTTTGAATGTGATCTCTTTGACCCTCCTTCCTCATCCACAGATTTATCGCCTGCTATTCCTCACCAACACTGAGGAGACCTCAGGTTCTAAAGATGCATATGGTGCAATATCCTCAACCATTTCTAGACAAGAACCAAACAAATTGacaatctatatctatatctatatctatctatctacaatatactgtatatatgaactACAcaaacatatgtatatatgtggaGGGAAAAACACAGCTATAGATGGTG
>XM_026924086.2
TGGTCTGAGCATCAAATCTGAGCTGGAATGACACTCTCCTGTTTTGAAACACTAAATGCGGTGTAAGAAAGTGCTTAAATGaagttttttaaacaaagaattgCCATCTGAGTTCCAGTAGCCCACAGGAGCGATTATTTAATGGTGATTTGATGAATAAGAAGAACATCATTCATTTGTTGACAACATGCGCGTGCTATGGGCGGTGCTGTGAGCAAAAACAAGACACCTTTCTCATTAGTGGAGAAGAGGAGTTTGTCCAGTAAGCAAAGGTTCCTGTCTCCCCATGATGTACTTGTCCAAAGCAGTCCATTGAGGCAGCAGAGTGACCAGTGCACATCATCCCAATtcaataaatgtacaaaaagtcAAGAGACAAATCCTCTACCTTCATCCACTTCCATCTTCCTGCCAGAATTTCCGCACCGCGAGGGGCGACCTGCACATTTACAGGTAACTGGGGTAATAGCGAAAGGATCATTTGGCCCTATTCTGAAGGTGAATGACTCGGCAAAAGGGAAGACCTATGCTATAAAGGTTTTACCCAAATCTGAGGTTCTGAGACATGGAGCCCTGGAACAGTCGAAAGAGGAGGTTATAATCCAGCGGCAGCTCAAACACGCTTTTGTCCTCGGTCTGGAGGACTGTTGGCAGAGTCAGAACAACCTCTTCGTCAtgtgtgattactgcagcaCTGGAGATCTGTACACCTACTGGATGCTAACTGGCCAGTTTAAAGAGAGGGAGGTTCGAGTGTTTGCTGCTGAACTCGGCAGTGCTTTAGGTTTTCTTCATGACTTTGGGATAATGCACAGGGATTTGAAGATGGAGAACATCCTTTTAACTGACCAAGGTCACGTCTGcctgggagattttggactgtcTCGTCGACTTGAGCGTGGTGAAAAAGCATTTACAATCTGTGGGACAATCCAATACATGGCTCCTGAGGTTCTGACTGGGGGTCCTTACAGCCATGCAGCAGACTGGTGGTCCCTGGGTATCCTGTTATACACACTGGCTGAGGGAGAGttCCCACTTCCTCCAGAGTCAGACCACAGCGGCATGCTGACCAAAGTCACTGAGCATTCTTATGAAATGCCTCTGAGCTTCAGTCCTGCACTGGCCCTGCTACTCACGGAGGTGCTGATGAAGAGTCCCATTCTACCAATCCTTGAGCTCAAGGATCACCCTAATCGGCCAGAGATATCAAAGAGGGGATTAACATTCGACCAGCTTCAGGACTTTGAATGTGATCTCTTTGACCCTCCTTCCTCATCCACAGATTTATCGCCTGCTATTCCTCACCAACACTGAGGAGACCTCAGGTTCTAAAGATGCATATGGTGCAATATCCTCAACCATTTCTAGACAAGAACCAAACAAATTGacaatctatatctatatctatatctatctatctacaatatactgtatatatgaactACAcaaacatatgtatatatgtggaGGGAAAAACACAGCTATAGATGGTG
>XM_034310501.1
TGGTCTGAGCATCAAATCTGAGCTGGAATGACACTCTCCTGTTTTGAAACACTAAATGCGGTGTAAGAAAGTGCTTAAATGaagttttttaaacaaagaattgCCATCTGAGTTCCAGTAGCCCACAGGAGCGATTATTTAATGGTGATTTGATGAATAAGAAGAACATCATTCATTTGTTGACAACATGCGCGTGCTATGGGCGGTGCTGTGAGCAAAAACAAGACACCTTTCTCATTAGTGGAGAAGAGGAGTTTGTCCAGTAAGCAAAGGTTCCTGTCTCCCCATGATGTACTTGTCCAAAGCAGTCCATTGAGGCAGCAGAGTGACCAGTGCACATCATCCCAATtcaataaatgtacaaaaagtcAAGAGACAAATCCTCTACCTTCATCCACTTCCATCTTCCTGCCAGAATTTCCGCACCGCGAGGGGCGACCTGCACATTTACAGGTAACTGGGGTAATAGCGAAAGGATCATTTGGCCCTATTCTGAAGGTGAATGACTCGGCAAAAGGGAAGACCTATGCTATAAAGGTTCTGAGACATGGAGCCCTGGAACAGTCGAAAGAGGAGGTTATAATCCAGCGGCAGCTCAAACACGCTTTTGTCCTCGGTCTGGAGGACTGTTGGCAGAGTCAGAACAACCTCTTCGTCAtgtgtgattactgcagcaCTGGAGATCTGTACACCTACTGGATGCTAACTGGCCAGTTTAAAGAGAGGGAGGTTCGAGTGTTTGCTGCTGAACTCGGCAGTGCTTTAGGTTTTCTTCATGACTTTGGGATAATGCACAGGGATTTGAAGATGGAGAACATCCTTTTAACTGACCAAGGTCACGTCTGcctgggagattttggactgtcTCGTCGACTTGAGCGTGGTGAAAAAGCATTTACAATCTGTGGGACAATCCAATACATGGCTCCTGAGGTTCTGACTGGGGGTCCTTACAGCCATGCAGCAGACTGGTGGTCCCTGGGTATCCTGTTATACACACTGGCTGAGGGAGAGttCCCACTTCCTCCAGAGTCAGACCACAGCGGCATGCTGACCAAAGTCACTGAGCATTCTTATGAAATGCCTCTGAGCTTCAGTCCTGCACTGGCCCTGCTACTCACGGAGCTCCTATGCAAGACCCCCATGCGACGTCTGCGCTGTCTGGAACGCTATATGAGTCAGAGGTTTTTTAATGGCTTCTCCTTTGACTCTCAGGTGCTGATGAAGAGTCCCATTCTACCAATCCTTGAGCTCAAGGATCACCCTAATCGGCCAGAGATATCAAAGAGGGGATTAACATTCGACCAGCTTCAGGACTTTGAATGTGATCTCTTTGACCCTCCTTCCTCATCCACAGATTTATCGCCTGCTATTCCTCACCAACACTGAGGAGACCTCAGGTTCTAAAGATGCATATGGTGCAATATCCTCAACCATTTCTAGACAAGAACCAAACAAATTGacaatctatatctatatctatatctatctatctacaatatactgtatatatgaactACAcaaacatatgtatatatgtggaGGGAAAAACACAGCTATAGATGGTG
>XM_034310502.1
TGGTCTGAGCATCAAATCTGAGCTGGAATGACACTCTCCTGTTTTGAAACACTAAATGCGGTGTAAGAAAGTGCTTAAATGaagttttttaaacaaagaattgCCATCTGAGTTCCAGTAGCCCACAGGAGCGATTATTTAATGGTGATTTGATGAATAAGAAGAACATCATTCATTTGTTGACAACATGCGCGTGCTATGGGCGGTGCTGTGAGCAAAAACAAGACACCTTTCTCATTAGTGGAGAAGAGGAGTTTGTCCAGTAAGCAAAGGTTCCTGTCTCCCCATGATGTACTTGTCCAAAGCAGTCCATTGAGGCAGCAGAGTGACCAGTGCACATCATCCCAATtcaataaatgtacaaaaagtcAAGAGACAAATCCTCTACCTTCATCCACTTCCATCTTCCTGCCAGAATTTCCGCACCGCGAGGGGCGACCTGCACATTTACAGGTAACTGGGGTAATAGCGAAAGGATCATTTGGCCCTATTCTGAAGGTGAATGACTCGGCAAAAGGGAAGACCTATGCTATAAAGCGGCAGCTCAAACACGCTTTTGTCCTCGGTCTGGAGGACTGTTGGCAGAGTCAGAACAACCTCTTCGTCAtgtgtgattactgcagcaCTGGAGATCTGTACACCTACTGGATGCTAACTGGCCAGTTTAAAGAGAGGGAGGTTCGAGTGTTTGCTGCTGAACTCGGCAGTGCTTTAGGTTTTCTTCATGACTTTGGGATAATGCACAGGGATTTGAAGATGGAGAACATCCTTTTAACTGACCAAGGTCACGTCTGcctgggagattttggactgtcTCGTCGACTTGAGCGTGGTGAAAAAGCATTTACAATCTGTGGGACAATCCAATACATGGCTCCTGAGGTTCTGACTGGGGGTCCTTACAGCCATGCAGCAGACTGGTGGTCCCTGGGTATCCTGTTATACACACTGGCTGAGGGAGAGttCCCACTTCCTCCAGAGTCAGACCACAGCGGCATGCTGACCAAAGTCACTGAGCATTCTTATGAAATGCCTCTGAGCTTCAGTCCTGCACTGGCCCTGCTACTCACGGAGCTCCTATGCAAGACCCCCATGCGACGTCTGCGCTGTCTGGAACGCTATATGAGTCAGAGGTTTTTTAATGGCTTCTCCTTTGACTCTCAGGTGCTGATGAAGAGTCCCATTCTACCAATCCTTGAGCTCAAGGATCACCCTAATCGGCCAGAGATATCAAAGAGGGGATTAACATTCGACCAGCTTCAGGACTTTGAATGTGATCTCTTTGACCCTCCTTCCTCATCCACAGATTTATCGCCTGCTATTCCTCACCAACACTGAGGAGACCTCAGGTTCTAAAGATGCATATGGTGCAATATCCTCAACCATTTCTAGACAAGAACCAAACAAATTGacaatctatatctatatctatatctatctatctacaatatactgtatatatgaactACAcaaacatatgtatatatgtggaGGGAAAAACACAGCTATAGATGGTG

Function

NR:

description
PREDICTED: putative serine/threonine-protein kinase F31E3.2 isoform X1

GO: NA

KEGG:

id description
K17529 SGK494; uncharacterized serine/threonine-protein kinase SgK494

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924085.2 True 1586 mRNA 0.46 12 6035073 6047606
XM_026924086.2 False 1496 mRNA 0.45 12 6035073 6047606
XM_034310501.1 False 1568 mRNA 0.46 12 6035073 6047606
XM_034310502.1 False 1517 mRNA 0.46 11 6035073 6047606

Neighbor

gene id symbol gene type direction distance location
aldoca aldoca,LOC108277446,LOC108415199,LOC107727913,LOC107661107,LOC107714247 coding downstream 1562 6029246 ~ 6033511 (-)
srsf1a srsf1b,LOC108278234,LOC108415197,LOC108278759,LOC107704814,LOC107587230 coding downstream 6470 6025463 ~ 6028603 (-)
hnf1ba hnf1b coding downstream 31724 5989418 ~ 6003349 (-)
synrg synrg coding downstream 59354 5939052 ~ 5975719 (-)
rab34a rab34a,LOC108278203,LOC107672399,LOC107758713,LOC107657101,LOC108443499 coding downstream 238098 5787013 ~ 5796975 (-)
LOC113532842 kiaa0100,LOC107661106,LOC107727920 coding upstream 1847 6049453 ~ 6080648 (-)
glod4 glod4,LOC102784280 coding upstream 36134 6083740 ~ 6087090 (-)
nxn nxn,typx coding upstream 47064 6094670 ~ 6156851 (-)
txndc17 txndc17,LOC107661118,LOC107727907 coding upstream 111242 6158848 ~ 6161315 (-)
fam222bb LOC108277976 coding upstream 134442 6182048 ~ 6188370 (-)
G221068 NA non-coding downstream 164446 5870401 ~ 5870627 (-)
G221026 NA non-coding downstream 239620 5795128 ~ 5795453 (-)
G220884 NA non-coding downstream 531131 5503040 ~ 5503942 (-)
G220864 NA non-coding downstream 546065 5488775 ~ 5489008 (-)
G220858 NA non-coding downstream 580150 5454596 ~ 5454923 (-)
G221214 NA non-coding upstream 44307 6091913 ~ 6092434 (-)
G221245 NA non-coding upstream 155458 6203064 ~ 6204930 (-)
G221450 NA non-coding upstream 278485 6326091 ~ 6416808 (-)
G221461 NA non-coding upstream 369276 6416882 ~ 6417625 (-)
G221448 dnhd1 non-coding upstream 466222 6513828 ~ 6514965 (-)
dynll2a dynll2a,LOC107554284 other downstream 10720 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 231100 5797928 ~ 5803973 (-)
G220990 NA other downstream 324182 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 435698 5550419 ~ 5599375 (-)
LOC113544632 arap1 other downstream 1063554 4897950 ~ 4971519 (-)
LOC113532805 NA other upstream 571566 6619172 ~ 6653418 (-)
zgc:77784 LOC108277423 other upstream 1344809 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 2357223 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2893412 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 3629653 9677259 ~ 9713059 (-)

Expression


Co-expression Network