LOC113532633 (pou2af1)


Basic Information

Item Value
gene id LOC113532633
gene name pou2af1
gene type coding
species striped catfish (Pangasianodon hypophthalmus)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_047608.1
NCBI id CM018554.1
chromosome length 25848897
location 6883128 ~ 6888991 (-)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome

Sequence

>XM_026924088.2
ttaaatgggAAACTCGTGATCTGCATTGTGGTGACATCATTTGAAACTGCATTGCTGTTGCTTTTATAAAGCAGCCCACTCAGGCGATCAGTCAACACTTCTGAGGCGaattagtgtgttagtggtcaTCTAAATGATTAAAACCATATTAAATTAACGCGTATCAGATTATGCACATGGGAAAATCACTGTCAGAACACGCTGCATCTAAACCATACCAGGGTGTGAGAGTCAAAGACCCTGTGAAAGAGCTACTGCGCAGAAAGAGAGGAAATACAGCTAAAACAGTGCCCCCaactgcaGTGGTGATTCCCAACAATACTTTGCCATCATATACACATGTTGgGTCTTCTGGTTTCCCAGGAAGCAGCCAAAGTTCTCTGAATGAATCAGCTGTAGACGTTGGTGCTCTGTGTCCTGGTTGGGTTGCTCAGCCCAGCGGCACAGCTGCTTTTCAGCCCCTGGGTCATTGGGCTCCTCCTGAGTATTTCCAACATGAGCAGAGCCTCTCTACCCTCCCCTCCCTTACAAGCGACATGTATGTCCAGCCTGTGTGTCCCAGCTATGCAGTGGTGGGCCCGTCGTCTGTTCTCACCCTGGCCCACGCCCCTCTCTTCACCAACCTCGGGACCATAAGCTCCTCCAGCTCAGGCCTGCCCCAGATAGATGTCCAAGATGGCTCACTGGCATACATTCCATGGGCCCCACCCTTGTCCCCCTGCCCACAGAATGTGGCTCCCCAGCTCCTGCCCATGGCTGTGCCTGTGTCTGAATCAGAACCGCAGCAGGAGGAACCTGCTCCATCCTCAGAGGGTACCTTAGCTTTGGAGAAACTtctggaagaggaggaggaagatcaGAAAGAGCCCTATGCCTGCAGTCCTTCATTGTTTACACAAGACATTTAGAATGCCACTTTTACACCTTTGCTGTTCTAAGCACTGAAATGTCACCTATGAAGTATGGAGTCTGCCTTTATAccataaataatatattcaatattctcTACATATGCATATATTATTCATACTGTATGTCTACTTAATTGTTCAtagatgtgctttttttgtatatagaatgctttatattttttttcctggatgGGCAAGTTTTACTTTAGatattattttagctttttgggggctaaaaaagacacaaaattgttttgaaaatacagaaaaacataaaCGTTAAAGTCAGTGATTTTTCTATGTTTCCATGAGTATGTTTGAGTTGTCAAACAAATTTAATCTGAGAATCATTTCAGTCTACTGTGCTCTGTTTTTcctaaacatgaaaaaaaagaccttttgtttgttttcctgcaaATATATCCTATCCATTCATATCCTGTAAGAAGAGATATATTTTCTCAGCAGGTGCCACATAAATCTTATGAGAGCCCTGGGAGTCCCTCAGGATTCCAGTGCAAATGTCATTCTCTAGATGAGTGTTTGGGGGGAAACAAAAGATTTGCTGCAGAGACTTTTATCTCATTATCTTGACACAGCCATTGTCCTTTACCTAGGGGTGCCAGTTTTACCTTGTGTTCCCAcaacatttttctggccctggTTGTCAGCCCTGCACCTGCTCTTCAGCTGTCAACTTAACCAAACTTTCATTATAGGTGACTAATAGTGAAGCATAACCAAAgacaataaagaaattattattta

Function

symbol description
pou2af1 Enables transcription coactivator activity. Involved in positive regulation of transcription by RNA polymerase II. Part of RNA polymerase II transcription regulator complex.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_026924088.2 True 1679 mRNA 0.43 5 6883128 6888991

Neighbor

gene id symbol gene type direction distance location
LOC113532877 LOC108277444 coding downstream 42157 6831234 ~ 6840971 (-)
tubd1 tubd1,LOC107581164 coding downstream 126862 6748916 ~ 6756266 (-)
LOC113532622 NA coding downstream 278064 6583963 ~ 6605064 (-)
itgae.2 NA coding downstream 303167 6558532 ~ 6579961 (-)
cul5a cul5,LOC107554266,LOC107714978,LOC107582587,LOC107701426 coding downstream 328677 6536048 ~ 6554451 (-)
atf5b LOC108278369,LOC108435284,LOC103039462 coding upstream 42531 6931522 ~ 6936069 (-)
phldb1b phldb1,LOC108277892 coding upstream 70132 6959123 ~ 7039860 (-)
zgc:112083 LOC108278169,LOC108435289,LOC107726099,LOC107662779 coding upstream 274966 7163957 ~ 7172748 (-)
map6b LOC108277516 coding upstream 285361 7174352 ~ 7186264 (-)
thap12b thap12,LOC108278397 coding upstream 298809 7187800 ~ 7195208 (-)
G221683 colca2 non-coding downstream 9769 6872831 ~ 6873359 (-)
G221682 colca2 non-coding downstream 11149 6871737 ~ 6871979 (-)
G221681 NA non-coding downstream 12854 6867784 ~ 6870274 (-)
G221659 NA non-coding downstream 76761 6806155 ~ 6806367 (-)
G221633 NA non-coding downstream 121341 6760656 ~ 6761787 (-)
G221812 NA non-coding upstream 233726 7122717 ~ 7124202 (-)
G221814 NA non-coding upstream 244526 7133517 ~ 7178296 (-)
G221844 NA non-coding upstream 329675 7218666 ~ 7220929 (-)
G221902 ada,LOC108277936,LOC100696748,LOC107597532 non-coding upstream 482379 7371370 ~ 7372320 (-)
LOC113532601 NA non-coding upstream 687563 7576554 ~ 7577056 (-)
LOC113532805 NA other downstream 229710 6619172 ~ 6653418 (-)
dynll2a dynll2a,LOC107554284 other downstream 858775 6021145 ~ 6024353 (-)
LOC113532612 LOC108277970 other downstream 1079155 5797928 ~ 5803973 (-)
G220990 NA other downstream 1172237 5710098 ~ 5710891 (-)
nectin3a LOC108278241 other downstream 1283753 5550419 ~ 5599375 (-)
zgc:77784 LOC108277423 other upstream 503424 7392415 ~ 7463499 (-)
sorl1 sorl1,LOC107717255 other upstream 1515838 8404829 ~ 8478912 (-)
G222809 oaf other upstream 2052027 8941018 ~ 8946899 (-)
LOC113532707 LOC108277821,LOC108277480,LOC108277820,LOC108277479,LOC108277478 other upstream 2788268 9677259 ~ 9713059 (-)
LOC113533081 LOC108277503,LOC108425821,LOC103022652 other upstream 3419059 10308050 ~ 10312516 (-)

Expression


Co-expression Network